Table 1. Physical and genetic mapping and map distance in base pairs (bp) or centiMorgans for each linkage group on the G19833 reference genome v 2.1 or in the BAT93 x Jalo EEP558 population, respectively, using SNP markers from the trans-legume orthologous genes (TOG) combined with other types of markers, including restriction fragment length polymorphism (RFLP) markers of the Bng and D series, simple sequence repeat (SSR) markers and isozyme, protein or phenotypic markers.

	Initial Genetic Distance		Refined Genetic Distance						Physical Distance			Comparison
Linkage Group	Total Markers in LG	Final Distance (cM)	TOG SNP markers	RFLP-markers	SSR-markers	Isozyme, Protein Phenotypic	Total high LOD	Final Distance (cM)	Chromosome length (Phytozome)	bp/cM (initial)	bp/cM (refined)	G / P Ratio (cM/Mb)
Pv1	104	230.1	79	7	2	0	88	147.0	52,159,049	226,680	354,823	2.82
Pv2	145	374.5	93	6	3	2 (Chs,I)	104	140.6	49,012,014	130,873	348,592	2.87
Pv3	119	191.1	77	7	0	0	84	114.4	52,266,928	273,506	456,879	2.19
Pv4	37	105.1	22	4	3	1 (Me)	30	84.7	45,799,695	435,773	540,728	1.85
Pv5	62	103.9	40	6	1	2 (Aco2,Diap)	49	82.8	40,676,787	391,499	491,266	2.04
Pv6	101	171.4	78	4	3	0	85	83.7	31,960,678	186,468	381,848	2.62
Pv7	82	104.9	88	6	3	2 (Chi,Phs)	99	108.3	51,729,989	493,136	477,655	2.09
Pv8	93	160.9	84	6	1	0	91	99.2	59,650,056	370,728	601,311	1.66
Pv9	90	72.3	77	4	2	0	83	46.5	37,463,265	518,164	805,662	1.24
Pv10	43	158.6	27	3	2	0	32	72.2	43,227,687	272,558	598,721	1.67
Pv11	89	89.7	61	6	0	0	67	67.5	50,184,061	559,466	743,468	1.35
TOTAL	981	1762.5	726	59	20	7	812	1097.5	514,130,209	291,705	468,456	2.13