Table 1. Physical and genetic mapping and map distance in base pairs (bp) or centiMorgans for each linkage group on the G19833 reference genome v 2.1 or in the BAT93 x Jalo EEP558 population, respectively, using SNP markers from the trans-legume orthologous genes (TOG) combined with other types of markers, including restriction fragment length polymorphism (RFLP) markers of the Bng and D series, simple sequence repeat (SSR) markers and isozyme, protein or phenotypic markers.
Initial Genetic Distance | Refined Genetic Distance | Physical Distance | Comparison | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Linkage Group | Total Markers in LG | Final Distance (cM) | TOG SNP markers | RFLP-markers | SSR-markers | Isozyme, Protein Phenotypic | Total high LOD | Final Distance (cM) | Chromosome length (Phytozome) | bp/cM (initial) | bp/cM (refined) | G / P Ratio (cM/Mb) |
Pv1 | 104 | 230.1 | 79 | 7 | 2 | 0 | 88 | 147.0 | 52,159,049 | 226,680 | 354,823 | 2.82 |
Pv2 | 145 | 374.5 | 93 | 6 | 3 | 2 (Chs,I) | 104 | 140.6 | 49,012,014 | 130,873 | 348,592 | 2.87 |
Pv3 | 119 | 191.1 | 77 | 7 | 0 | 0 | 84 | 114.4 | 52,266,928 | 273,506 | 456,879 | 2.19 |
Pv4 | 37 | 105.1 | 22 | 4 | 3 | 1 (Me) | 30 | 84.7 | 45,799,695 | 435,773 | 540,728 | 1.85 |
Pv5 | 62 | 103.9 | 40 | 6 | 1 | 2 (Aco2,Diap) | 49 | 82.8 | 40,676,787 | 391,499 | 491,266 | 2.04 |
Pv6 | 101 | 171.4 | 78 | 4 | 3 | 0 | 85 | 83.7 | 31,960,678 | 186,468 | 381,848 | 2.62 |
Pv7 | 82 | 104.9 | 88 | 6 | 3 | 2 (Chi,Phs) | 99 | 108.3 | 51,729,989 | 493,136 | 477,655 | 2.09 |
Pv8 | 93 | 160.9 | 84 | 6 | 1 | 0 | 91 | 99.2 | 59,650,056 | 370,728 | 601,311 | 1.66 |
Pv9 | 90 | 72.3 | 77 | 4 | 2 | 0 | 83 | 46.5 | 37,463,265 | 518,164 | 805,662 | 1.24 |
Pv10 | 43 | 158.6 | 27 | 3 | 2 | 0 | 32 | 72.2 | 43,227,687 | 272,558 | 598,721 | 1.67 |
Pv11 | 89 | 89.7 | 61 | 6 | 0 | 0 | 67 | 67.5 | 50,184,061 | 559,466 | 743,468 | 1.35 |
TOTAL | 981 | 1762.5 | 726 | 59 | 20 | 7 | 812 | 1097.5 | 514,130,209 | 291,705 | 468,456 | 2.13 |