Table 3.
Number of DEG encoding channels, H+ pumps and carriers gathered from the RNA sequencing data.
|
B |
VN |
B |
VN |
||||||
|---|---|---|---|---|---|---|---|---|---|
| Categories | Leaf | Root | Leaf | Root | Categories | Leaf | Root | Leaf | Root |
| Channels: | 21 | 29 | 35 | 56 | Carriers: | 61 | 87 | 151 | 193 |
| OSCA-type channels | 1 | 2 | 4 | 3 | ClC family anion:proton antiporter | 1 | 0 | 3 | 3 |
| Ammonium transporters | 2 | 3 | 1 | 6 | SWEET-type sugar efflux transporter | 4 | 5 | 8 | 8 |
| SLAC-type guard cell anion channels | 3 | 1 | 3 | 1 | HKT-type potassium/sodium cation transporter | 0 | 0 | 2 | 1 |
| GLR-type ligand-gated cation channels | 0 | 3 | 1 | 9 | HAK/KUP/KT-type potassium cation transporter | 4 | 6 | 11 | 14 |
| CNGC-type cyclic nucleotide-gated cation channels | 1 | 1 | 1 | 3 | Auxin transporter | 1 | 3 | 7 | 8 |
| Potassium cation channels | 2 | 3 | 2 | 4 | ProT-type proline transporter | 1 | 0 | 3 | 2 |
| Aquaporin/small solute channels | 3 | 4 | 9 | 14 | CCC-type cation:chloride co-transporter | 0 | 0 | 1 | 1 |
| monosaccharide transporters | 2 | 8 | 10 | 20 | |||||
| Active transport: | 5 | 9 | 22 | 22 | NHX-type proton:sodium cation antiporter | 0 | 0 | 2 | 1 |
| V-type ATPase | 0 | 0 | 9 | 8 | CHX-type proton:monovalent cation antiporter | 1 | 4 | 2 | 5 |
| P-type ATPase | 1 | 7 | 8 | 12 | CAX-type proton:calcium cation exchanger | 1 | 0 | 4 | 1 |
| Putative proton-translocating PP-ase | 2 | 0 | 3 | 0 | CCX-type cation:calcium cation exchanger | 1 | 0 | 1 | 2 |
In accordance with the Aramemnon database (http://aramemnon.uni-koeln.de/), for each gene the full name is written immediately after the abbreviation. B, Baldo; VN, Vialone Nano.