Table 1.
Strains | ST | Size (bp) | GC% | Genomic features | Susceptible AST phenotype | Resistant AST phenotype | Resistant genes | Genbank accession number |
---|---|---|---|---|---|---|---|---|
554S | 307 | 4,056,106 | 39 | 3884 CDS,8 rRNAs, 64tRNAs | TIG, CT, DOX, TET | AMX, AMC, TCC, FOX, CTX, CRO, IMP, ETP, CIP, AZT, AK, TOB, GEN, RA, SXT | blaMBL, blaA1, blaA2, blaADC-76, blaOXA-72, blaOXA-235, blaOXA-64, armA, aphA6, mphE, msrE, sul2 | NKXP00000000 |
554L | 2 | 3,922,359 | 39.1 | 3689 CDS,8 rRNAs, 62 tRNAs | TIG, CT | AMX, AMC, TCC, FOX, CTX, CRO, IMP, ETP, CIP, AZT, AK, TOB, GEN, RA, SXT, DOX, TET | blaMBL, blaA1, blaA2, blaADC-73, blaTEM-1D, blaOXA-23, blaOXA-66, armA, aph3”, Ia, aphA6, mphE, msrE, sul2, str A, strB, tetB | NKXQ00000000 |
CDS: Coding DNA Sequence, AMX: Amoxicillin, AMC: Amoxicillin/clavulanic acid, TCC: Ticarcillin/clavulanic acid, FOX: Cefoxitin, CTX: Cefotaxime, CRO: Ceftriaxone, IMP: Imipenem, ETP: Ertapenem, CIP: Ciprofloxacin, AZT: Aztreonam, AK: Amikacin, TOB: Tobramycin, GEN: Gentamycin, RA: Rifampicin, SXT: Sulfamethoxazole/trimethoprim, DOX: Doxycycline, TET: Tetracyclin, TIG: Tigecycline, CT: Colistin