Table 1.
Accession numbers of the genomes of the Azospirillum sp., strains used in this study and the predicted modular signaling proteins involved in c-di-GMP metabolism
| Strain | Chromosome Size (Mbs) aCDS bDGC/PDE/Hybrid |
p1-Size (Mbs) CDS DGC/PDE/Hybrid | p2 Size (Mbs) CDS DGC/PDE/Hybrid | p3- Size (Mbs) CDS DGC/PDE/Hybrid | p4- Size (Mbs) CDS DGC/PDE/Hybrid | p5-Size (Mbs) CDS DGC/PDE/Hybrid | p6- Size (Mbs) CDS DGC/PDE/Hybrid | p7- Size (Mbs) CDS DGC/PDE/Hybrid | cTotal Number | R |
|---|---|---|---|---|---|---|---|---|---|---|
| A. bra. Sp245 |
NC_016617.1 3.01 2, 690 10/3/6 |
NC_016594.1 1.76 1748 7/0/2 |
NC_016618.1 0.912 884 1/1/0 |
NC_016595.1 0.778 808 1/070 |
NC_016596.1 0.690 671 1/1/2 |
NC_016619 0.191 162 - |
NC_016597.1 0.167 125 - |
– | 35 | 6 |
| A. bra. Sp7 |
NZ_CP012914 3.01 2690 10/3/5 |
NZ_CP012915.1 1.75 629 7/0/2 |
NZ_CP012916.1 0.819 627 1/0/0 |
NZ_CP012917.1 0.645 555 1/1/2 |
NZ_CP012918.1 0.206 171 - |
NZ_CP012919.1 0.159 110 - |
_ | _ | 34 | 7 |
| A. bra. Az39 |
NZ_CP007793.1 3.06 2767 10/3/6 |
NZ_CP007794.1 1.9 1610 7/1/2 |
NZ_CP007795.1 0.933 754 1/0/0 |
NZ_CP007796.1 0.686 533 - |
NZ_CP007797.1 0.641 558 1/1/2 |
NZ_CP007798.1 0.163 107 - |
_ | _ | 35 | 8 |
| A. lip 4B |
NC_016622.1 2.99 2693 11/4/10 |
NC_016585.1 1.04 867 1/0/0 |
NC_016586.1 0.750 619 2/0/2 |
NC_016623.1 0.648 515 3/1/2 |
NC_016587.1 0.645 555 1/0/1 |
NC_016624.1 0.478 384 1/0/1 |
NC_016588.1 0.295 220 - |
– | 40 | 6 |
| Azo B510 |
NC_013854.1 3.3 2994 13/4/9 |
NC_013855.1 1.46 1127 2/0/4 |
NC_013856.1 0.723 613 1/0/0 |
NC_013857.1 0.681 532 3/1/2 |
NC_013858.1 0.628 536 0/0/1 |
NC_013859.1 0.537 422 0/0/1 |
NC_013860.1 0.261 181 - |
– | 41 | 9 |
| A. thio BV-S |
NZ_CP012401.1 3.04 17/4/9 |
NZ_CP012402.1 1.35 5/1/1 |
NZ_CP012403.1 0.879 1/0/0 |
NZ_CP012404.1 0.712 0/0/2 |
NZ_CP012405.1 0518 – |
NZ_CP012406.1 0.694 0/0/1 |
NZ_CP012407.1 0.330 – |
NZ_CP012408.1 0.083 – |
35 | 10–11 |
|
A. halo
DSM3675 |
NZ_AUCF00000000.1 5.26 4680 |
– | – | – | – | – | – – | – | 38 | 12 |
|
A. oryzae
A2P |
NZ_FXAK00000000.1 7.67 6669 |
– | – | – | – | – | – | – | 40 | 14 |
|
A. humi
SgZ-5 |
NZ_CP015285.1 3.18 2846 |
– | – | – | – | – | – | – | 29 | 13 |
A.bra = A. brasilense, A. lip = A lipoferum, Azo = Azospirillum B510, A. thiophilum BV-S, A. halopraeferens DMS3675, A. oryzae A2P, and A. humicireducens SgZ.5
Chr Chromosome, p1 plasmid 1, p2 plasmid 2, p3 plasmid 3, p4 plasmid 4, p5 plasmid 5, p6 plasmid 6. – no plasmid. R references
aTotal number of protein-coding genes
bNumber of GGDEF, EAL and hybrids proteins per replicon
cTotal number of GGDEF, EAL and hybrids proteins per genome