Table 6.
Complete sequencing results for the six loci and ambiguity occurrences. Those cattle for whom all six loci sequences were obtained are in bold. The strain clustering within the two major groups, based on the concatenation of five (all but msp4) or six loci, is indicated in the last column
| Bovine ID | Sampling date (year/month/day) | Date of birth | typA | ctrA | msp4 | pleD | recG | polA | Group in NJ tree |
|---|---|---|---|---|---|---|---|---|---|
| Twice-positive French samples | |||||||||
| BV2802 (Bull) | 2014/10/09 | 2011/11/27 | OK | OK | OK | OK | OK | OK | A |
| BV2802 (Bull) | 2016/03/04 | OK | OK | OK | OK | OK | OK | B | |
| BV9949 | 2016/03/04 | 2014/03/12 | OK | OK | OK | OK | OK | OK | A |
| BV9949 | 2016/05/17 | 1 AS | OK | OK | OK | OK | OK | ||
| BV0001 | 2016/03/04 | 2015/04/05 | 1 AS | OK | 6 AS | OK | OK | 2 AS | |
| BV0001 | 2016/05/17 | 3 AS | OK | 9 AS | 19 AS | OK | 1 AS | ||
| BV0006 | 2016/03/04 | 2015/04/27 | 1 AS | OK | OK | OK | OK | OK | |
| BV0006 | 2016/05/17 | OK | OK | 9 AS | OK | OK | 2 AS | ||
| BV0016 | 2016/03/04 | 2015/11/14 | OK | na | 4 AS | OK | OK | na | |
| BV0016 | 2016/05/17 | OK | OK | OK | OK | na | 2 AS | ||
| BV0012 | 2016/10/25 | 2015/07/09 | OK | OK | OK | OK | OK | OK | B |
| BV0012 | 2017/05/16 | OK | OK | OK | OK | OK | OK | A | |
| BV0047 | 2016/10/25 | 2016/08/29 | OK | OK | OK | OK | OK | OK | A |
| BV0047 | 2017/05/16 | OK | OK | OK | OK | OK | OK | A | |
| BV0048 | 2016/10/25 | 2016/08/31 | OK | OK | OK | OK | OK | OK | A |
| BV0048 | 2017/05/16 | OK | OK | OK | OK | OK | OK | B | |
| Other French samples | |||||||||
| BV1551 | 2014/10/09 | 2003/01/02 | OK | OK | OK | OK | OK | OK | B |
| BV9932 | 2014/10/09 | 2013/05/03 | OK | OK | OK | OK | OK | OK | A |
| BV9940 | 2014/10/09 | 2013/05/16 (dead 2015/02/23) | 2 AS | OK | 3 AS | 19 AS | na | OK | |
| BV9942 | 2014/10/09 | 2013/05/27 | OK | OK | OK | OK | na | OK | |
| BV9952 | 2014/10/09 | 2014/04/13 | 3 AS | OK | 5 AS | OK | na | OK | |
| BV9873 | 2014/10/09 | 2012/03/11 (dead 2016/06/09) | OK | OK | 2 AS | na | na | na | |
| BV9959 | 2016/03/04 | 2014/05/05 | OK | na | OK | na | OK | OK | |
| BV2193 | 2016/05/17 | na | OK | OK | OK | OK | OK | OK | A |
| BV2302 | 2016/05/17 | na | OK | OK | OK | OK | OK | OK | B |
| BV3559 | 2016/05/17 | na | OK | OK | OK | OK | OK | OK | A |
| BV0013 | 2016/05/17 | 2015/07/09 | 1 AS | OK | 10 AS | OK | 2 AS | 1 AS | |
| BV9955 | 2016/05/17 | 2014/04/15 | OK | OK | OK | OK | OK | OK | B |
| BV0027 | 2017/05/16 | 2016/04/13 | 5 AS | OK | OK | OK | OK | OK | |
| BV0049 | 2017/05/16 | 2016/10/05 | 5 AS | OK | OK | 19 AS | 1 AS | 2 AS | |
| BV0056 | 2017/05/16 | 2016/11/23 | OK | na | OK | OK | OK | OK | |
| Twice-positive German samples | |||||||||
| BV46 | 2011/05/22 | 2008/08/27 | OK | OK | na | OK | OK | OK | A |
| BV46 | 2011/08/21 | OK | OK | OK | OK | OK | OK | A | |
| BV58 | 2011/05/17 | 2008/08/18 | OK | OK | na | OK | OK | OK | A |
| BV58 | 2011/07/09 | OK | OK | OK | OK | OK | na | A | |
| BV61 | 2011/06/22 | 2008/10/15 | OK | OK | na | OK | OK | OK | A |
| BV61 | 2011/07/09 | OK | OK | na | OK | OK | OK | A | |
| Other German samples | |||||||||
| BV49 | 2011/05/19 | 2008/03/12 | OK | OK | OK | OK | OK | OK | A |
| BV34 | 2010/10/17 | 2007/10/14 | OK | OK | OK | OK | OK | OK | A |
| BV57 | 2011/06/04 | 2007/11/27 | OK | OK | OK | OK | OK | OK | A |
Abbreviations: OK complete sequence for the locus, without double peaks, AS ambiguous sites, na not available