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. 2018 Mar 9;14:82. doi: 10.1186/s12917-018-1410-7

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — a T2-weighted mid-sagittal MRI of a CKCS suffering from a large syrinx (syrinx ends indicated with arrows). b The geometry reconstruction process. 68 transverse plane scans were obtained (1). Each anatomical layer was segmented to create a mask (2). The mask was filtered out (3) and then binarised (4) to create a pure black and white image