Table 1.
Primer name | Sequence (5′ 3′) | Genbank acc. no. position | Amplicon length (bp) | Ta (°C) |
---|---|---|---|---|
ASIP Exon2Ca | GK000013.2b | 419 | 62 | |
for | AAATCAACATCTCGGCTTGG | 3–22 | ||
rev | CTTTTCTGGGTGCCTGATGT | 421–402 | ||
ASIP genomica | GK000013.2b | 430 | 62 | |
for | AAATCAACATCTCGGCTTGG | 3–22 | ||
rev | AAAAGGAAAGTGCGGAGGAG | 7,089–7,070 | ||
MC4R_SNP1 | AC_000181.1c | 755 | 57.5 | |
for | AAAATCCTGAATGTTGCCTGG | 3,056–3,036 | ||
rev | TCCCAATTCAGAGGCAGAAG | 2,282–2,301 | ||
MC4R_SNP2 | AC_000181.1c | 601 | 59 | |
for | TTCTGCCTCTGAATTGGGATTAC | 2,300–2,278 | ||
rev | GGCTGGGTAGAGTTCATTTTGG | 1,700–1,721 | ||
MC4R_SNP3 | AC_000181.1c | 541 | 58 | |
for | TCGTTTGGGGCAAGTCAAG | 1,804–1,786 | ||
rev | GATAGTGAAGTACCTGTCCACC | 1,264–1,285 | ||
MC4R_SNP4 | AC_000181.1c | 736 | 59 | |
for | CTCGGTGATCTGTAGCTCCTT | 1,339–1,318 | ||
rev | CACTCCATGCCCTACACAGA | 604–623 | ||
MC4R_SNP5 | AC_000181.1c | 544 | 57.5 | |
for | TGAAACAGTGCCCAGTCTT | 558–540 | ||
rev | TAATCCCAAATTGCCTGTGAG | 15–35 | ||
ATRN_SNP | AC_000170.1d | 600 | 57 | |
for | CAGCGAAACTTGGGGTAGAGT | 3,416–3,396 | ||
rev | GGCCTTCCAGCTCTAGTCG | 2,817–2,835 |
Adopted from Albrecht et al. (2012).
Nucleotide positions refer to partial sequence of GK000013.2 starting at nt 64,212,950 (i.e., nt 1 in this table = nt 64,212,950).
Nucleotide positions refer to partial sequence of AC_000181.1 starting at nt 59,670,000 (i.e., nt 1 in this table = nt 59,670,000).
Nucleotide positions refer to partial sequence of AC_000170.1 starting at nt 52,190,000 (i.e., nt 1 in this table = nt 52,190,000).