Table 4. Relative synonymous codon usage (RSCU) for protein-coding genes in Epipremnum aureum.
Codon | AA | Freq | RSCU | Codon | AA | Freq | RSCU |
---|---|---|---|---|---|---|---|
GCA | A (Ala) | 426 | 1.192 | AAT | N (Asn) | 984 | 1.545 |
GCC | A (Ala) | 227 | 0.635 | CCA | P (Pro) | 337 | 1.182 |
GCG | A (Ala) | 154 | 0.431 | CCC | P (Pro) | 217 | 0.761 |
GCT | A (Ala) | 622 | 1.741 | CCG | P (Pro) | 142 | 0.498 |
TGC | C (Cys) | 83 | 0.494 | CCT | P (Pro) | 444 | 1.558 |
TGT | C (Cys) | 253 | 1.506 | CAA | Q (Gln) | 700 | 1.480 |
GAC | D (Asp) | 225 | 0.416 | CAG | Q (Gln) | 246 | 0.520 |
GAT | D (Asp) | 858 | 1.584 | AGA | R (Arg) | 565 | 1.979 |
GAA | E (Glu) | 1,008 | 1.427 | AGG | R (Arg) | 185 | 0.648 |
GAG | E (Glu) | 405 | 0.573 | CGA | R (Arg) | 337 | 1.180 |
TTC | F (Phe) | 546 | 0.688 | CGC | R (Arg) | 119 | 0.417 |
TTT | F (Phe) | 1,042 | 1.312 | CGG | R (Arg) | 129 | 0.452 |
GGA | G (Gly) | 700 | 1.594 | CGT | R (Arg) | 378 | 1.324 |
GGC | G (Gly) | 176 | 0.401 | AGC | S (Ser) | 109 | 0.317 |
GGG | G (Gly) | 302 | 0.688 | AGT | S (Ser) | 442 | 1.284 |
GGT | G (Gly) | 579 | 1.318 | TCA | S (Ser) | 429 | 1.246 |
CAC | H (His) | 165 | 0.517 | TCC | S (Ser) | 347 | 1.008 |
CAT | H (His) | 473 | 1.483 | TCG | S (Ser) | 172 | 0.500 |
ATA | I (Ile) | 772 | 0.996 | TCT | S (Ser) | 566 | 1.645 |
ATC | I (Ile) | 450 | 0.580 | ACA | T (Thr) | 405 | 1.197 |
ATT | I (Ile) | 1,104 | 1.424 | ACC | T (Thr) | 238 | 0.704 |
AAA | K (Lys) | 1,117 | 1.464 | ACG | T (Thr) | 178 | 0.526 |
AAG | K (Lys) | 409 | 0.536 | ACT | T (Thr) | 532 | 1.575 |
CTA | L (Leu) | 366 | 0.784 | GTA | V (Val) | 532 | 1.470 |
CTC | L (Leu) | 202 | 0.433 | GTC | V (Val) | 204 | 0.564 |
CTG | L (Leu) | 165 | 0.354 | GTG | V (Val) | 195 | 0.539 |
CTT | L (Leu) | 595 | 1.275 | GTT | V (Val) | 517 | 1.428 |
TTA | L (Leu) | 895 | 1.918 | TGG | W (Trp) | 444 | 1.000 |
TTG | L (Leu) | 577 | 1.236 | TAC | Y (Tyr) | 221 | 0.419 |
ATA | M (Met) | 1 | 0.005 | TAT | Y (Tyr) | 835 | 1.581 |
ATG | M (Met) | 599 | 2.985 | TAA | TAA (*) | 36 | 1.256 |
CTG | M (Met) | 2 | 0.010 | TAG | TAG (*) | 28 | 0.977 |
AAC | N (Asn) | 290 | 0.455 | TGA | TGA (*) | 22 | 0.767 |
*, stop codon