Table 3.
Amino acid sequence alignment of the tetrameric repeats that constitute the central variable region of the B602L ORF within the 2011–2013 Kenyan and Eastern Ugandan isolates belonging to p72 genotype IX
| ASFV isolate | Tetrameric repeats | Number of repeats | CVR subgroup |
|---|---|---|---|
| Uga 95/1 (reference) | AAABNABBNABBNABAABBNABNABA | 26 | XXIV |
| Ken11/Kisauni1 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| Ken11/Kisauni2 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken11/kiambu.1 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken11/kiambu.2 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken12/kiambu.1 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken12/kiambu.2 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken12/kiambu.3 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken12/kiambu.4 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken12/nrb.2 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken12/nrb.3 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken12/muranga.1 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken12/machackos.1 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken12/athi.1 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken12/athi.2 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken12/burumba.1 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken12/busia.1 | AAABNABBNAB - - - BAFBBNABNABA | 23 | XXIVa |
| ken13/kiambu.1 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken13/kiambu.2 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken13/kiambu3.1 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken13/kiambu3.2 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken13/kiambu.4 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken13/kiambu.5 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken13/kirinyaga.1 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken13/busia.1 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken13/busia.2 | AAABNABBNAB - - - BAFBBNABNABA | 23 | XXIVa |
| ken13/busia.3 | AAABNABBNAB - - - BAFBBNABNABA | 23 | XXIVa |
| ken13/busia.4 | AAABNABBNAB - - - BABBBNABNABA | 23 | XXIV |
| ken13/busia.5 | AAABNABBNAB - - - BABBBNABNABA | 23 | XXIV |
| ken13/busia.6 | AAABNABBNAB - - - BABBBNABNABA | 23 | XXIV |
| ken13/busia.7 | AAABNABBNAB - - - BABBBNABNABA | 23 | XXIV |
| ken13/busia.8 | AAABNABBNAB - - - BABBBNABNABA | 23 | XXIV |
| ken13/nyadorera.1 | AAABNABBNAB - - - BABBBNABNABA | 23 | XXIV |
| ken13/kakamega.1 | AAABNABBNAB - - - BABBBNABNABA | 23 | XXIV |
| ug13/alupe.1 | AAABNABBNAB - - - BABBBNABNABA | 23 | XXIV |
| ken13/busia.9 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ken13/nakuru.1 | AAABNABBNAB - - - BAABBNABNABA | 23 | XXIV |
| ug13/busia.1 | AAABNABBNAB - - - BABBBNABNABA | 23 | XXIV |
| UG64/2013 | AAABNABBNAB - - - BABBBNABNABA | 23 | XXIV |
Single letter codes substituted for the tetrameric repeats are indicated as: A (CAST); a (CVST); B (CADT, CADI); N (NVDT); F (CANT). Dashes have been introduced manually to facilitate ease in visualization of similarities between the sequences