Fig. 2.

Performance in predicting in vivo binding on the InVivoRay dataset. For each RBP, all methods were trained on the InVitro dataset and tested on the InVivoRay dataset. Performance was measured by AUC of the predicted and real (CLIP/RIP) binary labels. The figure shows the box plot of AUCs for different methods including KNN, DeepBind [10], 1NN [5], RCK [17], and KNN-RCK. The vertical dashed line separates boxes for methods requiring only the target RBP’s homologous binding information for training to the left, and methods requiring the target RBP’s explicit binding data for training to the right. In each box, the dashed green line denotes the mean, and the brown line denotes the median