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. 2017 Sep 18;35(1):38–49. doi: 10.1093/molbev/msx249

Table 1.

Identification of PONDR-VLXT Predicted VPg-SON41p Disorder-Affecting Amino Acid Substitutions Based on the VPg PVY (group C) Natural Genetic Diversity.

PVY SON41p
93 94 95 96 98 100 101 102 105 108 114 115 117 118 119 121 123
I R D I E F S E R V E T A L D H S
VPg group C polymorphic sites 93 V
94 G d
95 E, N d
96 V
98 D
100 L d
101 G RB
102 Q o
105 K RB*
108 I
114 Q o
115 A, M, R, T RB
117 V
118 V
119 S, E, H RB
121 N RB*
123 K, E, N, T RB*

Second and third line/column: polymorphic amino acid sites and their corresponding positions in VPg protein sequence. Red/blue boxes: amino acids substitutions that are predicted (PONDR-VLXT) to enhance or reduce intrinsic disorder content in VPg-SON41p respectively. “d” and “o”: respectively intrinsic disorder and order promoting substitutions; “RB”: pvr23-resistance breaking sites previously identified (Ayme et al. 2006; Montarry et al. 2011); “RB*”: expected resistance-breaking sites (displaying high dN/dS ratios; Ayme et al. 2007; Moury et al. 2014).