Table 1.
Summary Statistics of the SNPs Most-Significantly Associated with Three Atypical Phenotypic Traits.
| Trait | Top SNPs | ||
|---|---|---|---|
| Black coat | 16:60391793(A/G) | 16:61370693(A/G) | 16:61718721(A/G) |
| Cases (n = 9) | 0.444 | 0.500 | 0.500 |
| Controls (n = 102) | 0.005 | 0.005 | 0.005 |
| Chi-squared –10 log P | 21.2133 | 21.5568 | 21.5568 |
| Chi-squared Bonferroni P | 8.53*10−17 | 3.86*10−17 | 3.86*10−17 |
| White claws | 20:27360052(A/G) | 20:31224886(A/T) | 20:37232759(A/G) |
| Cases (n = 16) | 0.188 | 0.188 | 0.188 |
| Controls (n = 98) | 0.000 | 0.000 | 0.000 |
| Chi-squared –10 log P | 9.0931 | 9.0931 | 9.0931 |
| Chi-squared Bonferroni P | 0.00011 | 0.00011 | 0.00011 |
| Spur | 11:24498328(A/G) | 11:27397738(A/C) | 11:35263745(A/C) |
| Cases (n = 5) | 0.400 | 0.300 | 0.400 |
| Controls (n = 113) | 0.000 | 0.000 | 0.000 |
| Chi-squared –10 log P | 20.1745 | 15.2735 | 20.1745 |
| Chi-squared Bonferroni P | 9.33*10−16 | 7.43*10−11 | 9.33*10−16 |
Note.—For each SNP (indicated as chr:position), the allele associated to the atypical phenotype is showed in italics, together with its frequency in “cases” and in “controls” and the association values detected by SVS.