a, Tryptophan metabolism by C. sporogenes.
b–e, Germ-free (GF) mice were mono-colonized with the wild-type strain or the fldC mutant. b, Altered tryptophan metabolites in fldC-colonized mice. c, Immune cell subsets in peripheral blood analysed using mass cytometry (CyTOF). d, e, Bacterial indirect ELISA. f, Defined community experiment. g–i, Germ-free mice were colonized with organisms listed in f, including either WT or fldC mutant C. sporogenes.
g, h, IPA was quantified in serum (g) or caecal contents (h) by LC-MS/MS. i, FITC-dextran intestinal permeability. b–e, g–i, Box and whisker plots show median values, 25th–75th percentiles and range for n = 5 biological replicates. b–e, i, P values are shown from two-tailed, unpaired t-tests.