Table 3. Comparison of repeat annotation for CARP and RMD.

Summary of specific repeat content from CENSOR output, using a combined library of Repbase ‘Vertebrate’ with CARP or RMD consensus libraries.

IR = Interspersed Repeats

SD = Segmental Duplications.

	Chicken		Bearded dragon		Anolis		Platypus		Opossum		Human
	CARP	RMD	CARP	RMD	CARP	RMD	CARP	RMD	CARP	RMD	CARP	RMD
SINE	0.09	0.09	1.72	2.83	4.02	4.14	19.51	19.51	10.44	10.67	11.25	11.41
LINE	7.73	8.31	11.61	12.55	14.65	15.23	20.40	20.84	28.21	28.83	18.88	18.97
LTR	3.37	3.62	2.38	3.12	5.98	6.26	1.34	1.32	10.62	10.29	9.13	9.49
DNA	2.60	2.08	3.55	6.62	12.84	15.13	1.72	1.67	3.06	2.27	4.49	4.34
Other	1.52	2.22	1.39	1.44	1.51	1.65	2.89	3.10	1.72	1.47	2.04	1.93
IR	15.31	16.32	20.65	26.56	39.00	42.41	45.86	46.44	54.05	53.53	45.79	46.14
Potential SD	1.99	0.17	22.22	7.92	12.02	4.84	12.60	0.58	3.93	0.87	2.94	0.00
Total	17.30	16.49	42.87	34.48	51.02	47.25	58.46	47.02	57.98	54.40	48.73	46.14