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. 2018 Mar 14;13(3):e0194424. doi: 10.1371/journal.pone.0194424

Table 3. Genetic diversity and neutrality tests for total samples and for geographic and haplogroups of Protonectarina sylveirae (according to the haplotype network).

Genetic Diversity Neutrality Tests*
Sample N H (no. in network) Hd Π S K Tajima’s D Fu’s Fs R2
Total 117 35 (1–35) 0,921±0,015 0,01445±0,00078 144 33,496 -0,08987 -0,70984 0,08917
A 24 9 (2, 3, 24–29, 33) 0,812±0,058 0,00417±0,00028 27 9,66304 -0,06530 0,03461 0,12437
B 10 2 (22, 23) 0,356±0,159 0,00077±0,00034 5 1,77778 -0,08276 0,21385 0,19208
C/CE 67 15 (1, 4–15, 20, 21) 0,802±0,037 0,00430±0,00029 38 9,9638 -0,10060 -0,26695 0,09959
D 10 3 (30–32) 0,600±0,131 0,00029±0,00008 2 0,66667 -0,03511 0,24600 0,22369
E 4 4 (16–19) 1,000±0,177 0,01661±0,00736 74 38,5000 -0,01890 2,02953 0,24360
F 2 2 (34, 35) 1,000±0,500 0,00086±0,00043 2 2,0000 0,81599 0,31076
NE 16 9 (16–19, 30–32, 34, 35) 0,850±0,077 0,01275±0,00299 103 29,5583 -0,11091 0,17213 0,13588
SO 34 11 (2, 3, 22–29, 33) 0,856±0,034 0,00876±0,00066 56 20,3226 -0,03782 -0,24629 0,11423

* Average number.

N: number of samples; H: number of haplotypes; Hd: haplotype diversity; π: nucleotide diversity; S: number of variable sites; k: average number of nucleotide differences; ±: standard deviation. Values of p-value: R2: 0,000; Tajima’s D and Fu’s Fs: not significant. Groups shown in Fig 4.