Table 3. Genetic diversity and neutrality tests for total samples and for geographic and haplogroups of Protonectarina sylveirae (according to the haplotype network).
Genetic Diversity | Neutrality Tests* | ||||||||
---|---|---|---|---|---|---|---|---|---|
Sample | N | H (no. in network) | Hd | Π | S | K | Tajima’s D | Fu’s Fs | R2 |
Total | 117 | 35 (1–35) | 0,921±0,015 | 0,01445±0,00078 | 144 | 33,496 | -0,08987 | -0,70984 | 0,08917 |
A | 24 | 9 (2, 3, 24–29, 33) | 0,812±0,058 | 0,00417±0,00028 | 27 | 9,66304 | -0,06530 | 0,03461 | 0,12437 |
B | 10 | 2 (22, 23) | 0,356±0,159 | 0,00077±0,00034 | 5 | 1,77778 | -0,08276 | 0,21385 | 0,19208 |
C/CE | 67 | 15 (1, 4–15, 20, 21) | 0,802±0,037 | 0,00430±0,00029 | 38 | 9,9638 | -0,10060 | -0,26695 | 0,09959 |
D | 10 | 3 (30–32) | 0,600±0,131 | 0,00029±0,00008 | 2 | 0,66667 | -0,03511 | 0,24600 | 0,22369 |
E | 4 | 4 (16–19) | 1,000±0,177 | 0,01661±0,00736 | 74 | 38,5000 | -0,01890 | 2,02953 | 0,24360 |
F | 2 | 2 (34, 35) | 1,000±0,500 | 0,00086±0,00043 | 2 | 2,0000 | — | 0,81599 | 0,31076 |
NE | 16 | 9 (16–19, 30–32, 34, 35) | 0,850±0,077 | 0,01275±0,00299 | 103 | 29,5583 | -0,11091 | 0,17213 | 0,13588 |
SO | 34 | 11 (2, 3, 22–29, 33) | 0,856±0,034 | 0,00876±0,00066 | 56 | 20,3226 | -0,03782 | -0,24629 | 0,11423 |
* Average number.
N: number of samples; H: number of haplotypes; Hd: haplotype diversity; π: nucleotide diversity; S: number of variable sites; k: average number of nucleotide differences; ±: standard deviation. Values of p-value: R2: 0,000; Tajima’s D and Fu’s Fs: not significant. Groups shown in Fig 4.