Table 1.
Crystallographic statistics of the LC/X X-ray crystal structures.
LC/X | Apo-LC/X | |
---|---|---|
PDB code | 6F47 | 6F4E |
Synchrotron source, λ | Diamond I02, 0.979 Å | SLS PXI, 1.00 Å |
Resolution (Å) | 1.35 (1.37–1.35) | 2.4 (2.49–2.40) |
Space group | P212121 | P22121 |
Cell dimensions and angles | a = 58.3, b = 86.7, c = 93.1 Å; α = β = γ = 90° | a = 52.3, b = 94.5, c = 113.0 Å; α = β = γ = 90° |
Total/Unique reflections | 592,965 98,954 |
176,299 21,016 |
Completeness (%)a | 94.9 (64.8) | 93.4 (88.9) |
R merge a,b | 0.083 (0.98) | 0.123 (0.97) |
R pim a,c | 0.053 (0.74) | 0.062 (0.52) |
I/σ(I)a | 9.2 (1.0) | 8.9 (2.1) |
CC1/2d | 0.99 (0.42) | 0.99 (0.69) |
Multiplicity | 6.0 (3.9) | 8.4 (7.8) |
Rcryste (%) | 14.3 | 21.5 |
Rfreef (%) | 17.6 | 26.0 |
Rmsd in bond lengths (Å) | 0.009 | 0.009 |
Rmsd in bond angles (°) | 1.34 | 1.31 |
B- factor statistics (Å 2 ) | ||
Protein all atoms | 20.3 | 53.6 |
Protein main chain atoms | 18.4 | 51.4 |
Protein side chain atoms | 22.2 | 55.7 |
Solvent atoms | 36.0 | 46.8 |
Zn2+ ion | 18.2 (0.33 occupancy) | n/a |
Ramachandran statistics (Molprobity) | ||
Favored | 97.7% | 97.1% |
Outliers | 0.0% | 0.0% |
aValues in parentheses refer to the highest resolution shell.
bRmerge = ΣΣi|Ih − Ihi|/ΣΣiIh, where Ih is the mean intensity for reflection h.
cRpim = Σh (1/nh − 1) Σl |Ihl − (Ih)|/ΣhΣl(Ih).
dCorrelation coefficient between random half datasets.
eRcryst = Σ‖Fo| − |Fc‖/Σ|Fo|, where Fo and Fc are measured and calculated structure factors, respectively.
fRfree = Σ‖Fo| − |Fc|/Σ|Fo|, calculated from 5% of the reflections selected randomly and omitted during refinement.