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. 2018 Mar 14;8:4518. doi: 10.1038/s41598-018-22842-4

Table 1.

Crystallographic statistics of the LC/X X-ray crystal structures.

LC/X Apo-LC/X
PDB code 6F47 6F4E
Synchrotron source, λ Diamond I02, 0.979 Å SLS PXI, 1.00 Å
Resolution (Å) 1.35 (1.37–1.35) 2.4 (2.49–2.40)
Space group P212121 P22121
Cell dimensions and angles a = 58.3, b = 86.7, c = 93.1 Å; α = β = γ = 90° a = 52.3, b = 94.5, c = 113.0 Å; α = β = γ = 90°
Total/Unique reflections 592,965
98,954
176,299
21,016
Completeness (%)a 94.9 (64.8) 93.4 (88.9)
R merge a,b 0.083 (0.98) 0.123 (0.97)
R pim a,c 0.053 (0.74) 0.062 (0.52)
I/σ(I)a 9.2 (1.0) 8.9 (2.1)
CC1/2d 0.99 (0.42) 0.99 (0.69)
Multiplicity 6.0 (3.9) 8.4 (7.8)
Rcryste (%) 14.3 21.5
Rfreef (%) 17.6 26.0
Rmsd in bond lengths (Å) 0.009 0.009
Rmsd in bond angles (°) 1.34 1.31
B- factor statistics (Å 2 )
Protein all atoms 20.3 53.6
Protein main chain atoms 18.4 51.4
Protein side chain atoms 22.2 55.7
Solvent atoms 36.0 46.8
Zn2+ ion 18.2 (0.33 occupancy) n/a
Ramachandran statistics (Molprobity)
Favored 97.7% 97.1%
Outliers 0.0% 0.0%

aValues in parentheses refer to the highest resolution shell.

bRmerge = ΣΣi|IhIhi|/ΣΣiIh, where Ih is the mean intensity for reflection h.

cRpim = Σh (1/nh − 1) Σl |Ihl − (Ih)|/ΣhΣl(Ih).

dCorrelation coefficient between random half datasets.

eRcryst = Σ‖Fo| − |Fc‖/Σ|Fo|, where Fo and Fc are measured and calculated structure factors, respectively.

fRfree = Σ‖Fo| − |Fc|/Σ|Fo|, calculated from 5% of the reflections selected randomly and omitted during refinement.