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. 2018 Mar 14;8:4536. doi: 10.1038/s41598-018-22692-0

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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The alpha- and beta- diversity comparisons for the ileum, cecum, and colon. (A) The Shannon’s diversity index at the sampling site (mean ± SD). (B) The Chao1 index at the sampling site (mean ± SD). (C) Weighted UniFrac PCoA of the microbiota. Each symbol and color represents each gut location microbiota. (D) Bray Curtis dendrogram analyses were performed on the 16S rRNA V4–V5 region data. Samples are coded to represent the sampling site (Ileum; Cecum; Colon) and feed conversion ratio status (H, high feed conversion ratio; L, low feed conversion ratio). For example, IleumH represented a sample that was collected from the ileum of a high FCR pig.