Table 2.
Promoter predictions in six systems using “PromPredict” algorithm.
| Promoter sequences | Genome GC | Total predictions (−500 to +500 w.r.t TSS at ‘0’) | TP (−500 to 100) | GC% in TP region | TP genes | Recall | |
|---|---|---|---|---|---|---|---|
| S. cerevisiae | 4912 | 38.3 | 11227 | 6312 | 37.6 | 4182 | 85.1 |
| C. elegans | 18457 | 35.4 | 28823 | 23063 | 35.1 | 16178 | 87.7 |
| D. melanogaster | 12898 | 42.1 | 18332 | 16232 | 39.8 | 11856 | 91.9 |
| Zebrafish | 5366 | 36.1 | 8220 | 5464 | 37.6 | 4313 | 80.4 |
| Mouse | 17451 | 41.9 | 22017 | 14281 | 54.6 | 11721 | 67.2 |
| Human | 29456 | 40.9 | 43043 | 27138 | 53.1 | 21009 | 71.3 |
Predictions in −500 to +500 regions w.r.t TSS of S. cerevisiae, C. elegans and D. Melanogaster, zebrafish, mouse and human have been carried out. PromPredict performs better in the case of yeast and invertebrates as compared to mammals. The −500 to +100 region relative to TSS is considered as true positive region.