Skip to main content
. 2018 Mar 14;8:4520. doi: 10.1038/s41598-018-22129-8

Table 3.

Comparison between performance of PromPredict and EP3.

Promoter sequences Total predictions in −1000 to +1000nt region w.r.t TSS at ‘0’ TP TP genes Recall
PromPredict Mouse 17451 50834 50834 17301 99.1
Human 29456 90622 90622 29246 99.3
EP3 Mouse 17451 87255 13336 8052 46.1
Human 29456 147279 18810 10522 35.7

Prediction for −1000 to +1000 region w.r.t TSS for both human and mouse are used for prediction. The whole region −1000 to +1000 region has been used as a truepositiveregion16 to calculate recall values. PromPredict gives far better recall value when compared to EP3.