Table 1.
Highly abundant proteins under optimal growth conditions in Methanonatronarchaeum thermophilum AMET1.
| Genbank Locus ID | Protein Name | Annotation | NemPAI Base Value |
|---|---|---|---|
| Methanogenesis related proteins | |||
| AMET1_1459 | McrB | Methyl coenzyme M reductase, beta subunit | 11.7 |
| AMET1_1461 | McrG | Methyl coenzyme M reductase, gamma subunit | 68.7 * |
| AMET1_1049 | MtaC | Methanogenic corrinoid protein MtaC | 78.6 * |
| AMET1_0104 | MttB1 | Trimethylamine-corrinoid methyltransferase | 68.4 * |
| AMET1_0460 | MtmB | Monomethylamine methyltransferase | 53.6 * |
| AMET1_0747 | MtaB | Methanol-cobalamin methyltransferase B subunit | 9.2 |
| AMET1_0264 | IlvH | Acetolactate synthase, small subunit | 9.0 |
| Translation related proteins | |||
| AMET1_0496 | RplD | Ribosomal protein L4 | 10.3 |
| AMET1_0619 | RPS28A | Ribosomal protein S28E/S33 | 18.6 |
| AMET1_0046 | RPL20A | Ribosomal protein L20A | 10.3 |
| AMET1_0579 | TEF1 | Translation elongation factor EF-1 alpha, GTPase | 9.5 |
| DNA and RNA binding protein | |||
| AMET1_0176 | LSM1 | Small nuclear ribonucleoprotein | 13.2 |
| AMET1_0379 | Ssh10b | Archaeal DNA-binding protein Alba | 161.1 * |
| AMET1_1312 | HHT1 | Histones H3 and H4 | 22.6 |
| Chaperones | |||
| AMET1_1255 | IbpA | Molecular chaperone, HSP20 family, | 9.8 |
| AMET1_1030 | - | Nucleotide-binding protein, UspA family | 43.2* |
| Biological function unknown | |||
| AMET1_0092 | - | Transcriptional regulator, ArsR family | 56.8 * |
| AMET1_0509 | - | CBS domain | 10.0 |
| AMET1_0343 | - | CBS domain | 9.0 |
| AMET1_0636 | - | Uncharacterized protein | 39.0 * |
* Proteins that belong to super-abundant heavy tail of the abundance distribution.