Table 6.
SNP | GGA | Position | N | Genotype | LSM ± SD | Additive Effect | Dominance Effect |
---|---|---|---|---|---|---|---|
rs15213482 | chr1 | 25, 118, 696 | 125 | AA | 35.02 ± 7.65 B | 14.41 | −10.70 |
330 | AG | 9.91 ± 4.69 A | |||||
320 | GG | 6.20 ± 4.76 A | |||||
rs318069175 | chr1 | 25, 124, 828 | 318 | AA | 6.08 ± 4.79 A | −12.95 | −8.31 |
329 | AG | 10.72 ± 4.71 A | |||||
127 | GG | 31.98 ± 7.63 B | |||||
- | chr2 | 145, 118, 378 | 276 | CC | 1.57 ± 5.14 A | −12.65 | 0.17 |
357 | TC | 14.39 ± 4.50 AB | |||||
141 | TT | 26.86 ± 7.18 B | |||||
rs315791208 | chr2 | 23, 470, 408 | 166 | AA | −3.58 ± 6.62 A | −8.82 | 12.43 |
380 | AG | 17.67 ± 4.36 B | |||||
230 | GG | 14.05 ± 5.61 B | |||||
rs313915675 | chr2 | 39, 376, 196 | 623 | AA | 9.67 ± 3.44 a | 10.14 | 29.01 |
123 | AC | 28.55 ± 7.72 b | |||||
27 | CC | −10.60 ± 16.47 a | |||||
rs315951802 | chr2 | 56, 946, 139 | 64 | AA | −1.63 ± 10.68 a | −10.64 | −3.53 |
293 | AG | 5.49 ± 5.00 a | |||||
417 | GG | 19.66 ± 4.2 b | |||||
rs318158632 | chr4 | 5, 122, 558 | 249 | AA | 14.44 ± 5.41 b | 8.36 | 11.93 |
362 | AG | 18.01 ± 4.50 b | |||||
167 | GG | −2.29 ± 6.59 a | |||||
rs315081661 | chr4 | 12, 239, 357 | 215 | CC | 15.95 ± 5.82 b | 8.83 | 10.09 |
386 | TC | 17.21 ± 4.35 b | |||||
175 | TT | −1.71 ± 6.45 a | |||||
- | chr5 | 16, 429, 960 | 246 | AA | 23.49 ± 5.46 b | 10.08 | −5.28 |
363 | AT | 8.13 ± 4.50 a | |||||
164 | TT | 3.33 ± 6.70 a | |||||
rs316109660 | chr10 | 1, 504, 159 | 50 | AA | 32.29 ± 12.03 b | 7.97 | −20.56 |
325 | AG | 3.76 ± 4.72 a | |||||
400 | GG | 16.34 ± 4.27 b | |||||
- | chr18 | 4, 638, 932 | 223 | CC | 23.67 ± 5.72 B | 10.90 | −1.90 |
361 | CG | 10.86 ± 4.48 AB | |||||
193 | GG | 1.86 ± 6.16 A | |||||
- | chrZ | 46, 332, 884 | 133 | AA | 12.64 ± 7.68 AB | −2.78 | −20.25 |
145 | AG | −4.82 ± 7.53 A | |||||
497 | GG | 18.21 ± 3.90 B |
N: number of genotype records. a,b Means in the same column with different superscripts significantly differ at p < 0.05. A,B Means in the same column with different superscripts significantly differ at p < 0.01.