Figure 4.

Phylogenetic analysis of clonal complex 1 (CC1) genomes, showing a parsimony tree generated by kSNP using a core single-nucleotide polymorphism (SNP) alignment. Box A: clade containing both AMR isolates identified in this study, and three other ST328 isolates from India. With the exception of Lm16-001, isolates in this clade had a mutation leading to a premature stop codon (PMSC) in their respective fepR genes. Genotype: Cip^R, PMSC in the fepR gene and/or phenotypically demonstrated resistance (+); ermB, presence (+) or absence (−).