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. 2018 Feb 14;9(2):87. doi: 10.3390/genes9020087

Table 3.

SNPs significantly associated with PEG-induced drought tolerance indexes at the germination stage in sesame.

Trait LG QTL Peak SNP –log10 (p) Ref
Base
SNP
Base
MAF Genes in LD PVE (%) Candidate Gene ID Gene Name
ST-DFW LG1 qDFW1.1 SNP1657071 8.63 A G 0.06 24 7.23 SIN_1021558 SiCCD8
SIN_1021566 SiEMF1
LG5 qDFW5.1 SNP1848856 8.55 C T 0.07 24 6.89 SIN_1007701 SiGPAT3
SIN_1007708 SiAGL37
SIN_1007698 SiHKT1
LG7 qDFW7.1 SNP10174676 6.54 G A 0.04 27 4.93 SIN_1008841 SiGDH2
SIN_1008842 SiCYP76C7
SIN_1009337 SiDREB
LG8 qDFW8.1 SNP765526 12.88 A G 0.03 33 10.45 SIN_1019660 SiRABA1D
SIN_1019661 SiWRKY69
LG10 qDFW10.1 SNP10697200 8.85 G A 0.06 7 7.67 NA NA
ST-DGR LG1 qDGR1.1 SNP1657071 8.63 A G 0.06 24 7.23 SIN_1021566 SiEMF1
SIN_1021558 SiCCD8
LG4 qDGR4.1 SNP6089419 8.66 T G 0.07 10 7.22 SIN_1001572 SiGRV2
LG7 qDGR7.1 SNP10174187 9.01 T C 0.03 26 6.61 SIN_1008842 SiCYP76C7
SIN_1009337 SiDREB
SIN_1008841 SiGDH2
LG11 qDGR11.1 SNP9099698 6.59 G C 0.06 25 5.3 SIN_1024695 SiGRF5
SIN_1024693 SiOPR3

PVE (%): Phenotypic variance explained, refbase: reference allele, SNPbase: non-reference allele, MAF: Minor Allele Frequency. LG: Linkage Group.