Table 3.
SNPs significantly associated with PEG-induced drought tolerance indexes at the germination stage in sesame.
| Trait | LG | QTL | Peak SNP | –log10 (p) | Ref Base |
SNP Base |
MAF | Genes in LD | PVE (%) | Candidate Gene ID | Gene Name |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ST-DFW | LG1 | qDFW1.1 | SNP1657071 | 8.63 | A | G | 0.06 | 24 | 7.23 | SIN_1021558 | SiCCD8 |
| SIN_1021566 | SiEMF1 | ||||||||||
| LG5 | qDFW5.1 | SNP1848856 | 8.55 | C | T | 0.07 | 24 | 6.89 | SIN_1007701 | SiGPAT3 | |
| SIN_1007708 | SiAGL37 | ||||||||||
| SIN_1007698 | SiHKT1 | ||||||||||
| LG7 | qDFW7.1 | SNP10174676 | 6.54 | G | A | 0.04 | 27 | 4.93 | SIN_1008841 | SiGDH2 | |
| SIN_1008842 | SiCYP76C7 | ||||||||||
| SIN_1009337 | SiDREB | ||||||||||
| LG8 | qDFW8.1 | SNP765526 | 12.88 | A | G | 0.03 | 33 | 10.45 | SIN_1019660 | SiRABA1D | |
| SIN_1019661 | SiWRKY69 | ||||||||||
| LG10 | qDFW10.1 | SNP10697200 | 8.85 | G | A | 0.06 | 7 | 7.67 | NA | NA | |
| ST-DGR | LG1 | qDGR1.1 | SNP1657071 | 8.63 | A | G | 0.06 | 24 | 7.23 | SIN_1021566 | SiEMF1 |
| SIN_1021558 | SiCCD8 | ||||||||||
| LG4 | qDGR4.1 | SNP6089419 | 8.66 | T | G | 0.07 | 10 | 7.22 | SIN_1001572 | SiGRV2 | |
| LG7 | qDGR7.1 | SNP10174187 | 9.01 | T | C | 0.03 | 26 | 6.61 | SIN_1008842 | SiCYP76C7 | |
| SIN_1009337 | SiDREB | ||||||||||
| SIN_1008841 | SiGDH2 | ||||||||||
| LG11 | qDGR11.1 | SNP9099698 | 6.59 | G | C | 0.06 | 25 | 5.3 | SIN_1024695 | SiGRF5 | |
| SIN_1024693 | SiOPR3 |
PVE (%): Phenotypic variance explained, refbase: reference allele, SNPbase: non-reference allele, MAF: Minor Allele Frequency. LG: Linkage Group.