Table A1.
Detailed overview of fish species with a sequenced genome. Diverse levels of genome assemblies (draft, contig, scaffold, fully assembled genomes to the chromosome level) and numbers of assembly versions are listed together with basic cytogenetic traits (2n, C-value, GC%).
| Species | Order a | Family a | Size (Mb) | C-val b | n/2n c | Assembly/Type d | GC% | Notes e |
|---|---|---|---|---|---|---|---|---|
| Acanthochromis polyacanthus | Ovalentaria | Pomacentridae | 991.585 | 0.94 | — | 1/S | 41.5 | |
| Amphilophus citrinellus | Cichliformes | Cichlasomat., Heroini | 844.903 | — | —/48 | 1/S | 41.4 | |
| Anguilla anguilla | Anguilliformes | Anguillidae | 1018.7 | 1.11–1.67 | —/38 | 1/S | 42.9 | |
| Anguilla japonica | Anguilliformes | Anguillidae | 1288.6 | 1.09 | —/38 | 1/S | 38.8 | |
| Anguilla rostrata | Anguilliformes | Anguillidae | 1413.03 | 1.01–1.66 | —/38 | 1/S | 41.0 | |
| Anoplopoma fimbria | Perciform × Scorpaeniform | Anoplomatidae | 699.326 | 0.71–0.84 | — | 1/C | 40.3 | |
| Astyanax mexicanus | Characiformes | Characidae | 1335.24 | — | 25/50 | 1/Ch | 38.4 | |
| Austrofundulus limnaeus | Cyprinodontiformes | Rivulidae | 866.963 | — | — | 1/S | 41.1 | |
| Boleophthalmus pectinirostris | Gobiiformes | Gobiid., Oxudercinae | 955.752 | — | —/46 | 1/S | 40.1 | |
| Branchiostoma belcheri | Cephalochordata | Branchiostomidae | 426.124 | — | —/36 | 2/S | 40.15 | |
| Branchiostoma floridae | Cephalochordata | Branchiostomidae | 521.895 | — | — | 1/S | 41.8 | |
| Callorhinchus milii | Chimaeriformes | Callorhinchidae | 974.499 | 1.94 | — | 1/S | 42.6 | |
| Channa argus | Perciformes | Channidae | 615.3 | 0.63–0.77 | —/48 | 1/D | — | |
| Clupea harengus | Clupeiformes | Clupeidae | 807.712 | — | —/50-52 | 1/S | 44.5 | |
| Cottus rhenanus | Perciformes | Cottidae | 563.609 | — | — | 1/S | 36.8 | |
| Cynoglossus semilaevis | Pleuronectiformes | Cynoglossidae | 470.199 | 0.62 C. bilineatus | 22 | 1/Ch | 41.27 | |
| Cyprinodon nevadensis | Cyprinodontiformes | Cyprinodontidae | 1011.85 | — | —/48 | 1/S | 39.0 | |
| Cyprinodon variegatus | Cyprinodontiformes | Cyprinodontidae | 1035.18 | 1.6 | —/48 | 1/S | 39.5 | |
| Cyprinus carpio | Cypriniformes | Cyprinidae | 1713.66 | 1.6–2.0 | 50/100 | 2/S, Ch | med 37.1 | |
| Danio rerio | Cypriniformes | Cyprinidae | 1679.2 | 1.6–2.3 | 25/48 | 4/3S, 1 Chr | med 36.7 | |
| Dicentrarchus labrax | Moroniformes | Moronidae | 675.917 | 0.78 | — | 2/S | 40.4 | |
| Eptatretus burgeri | Myxiniformes | Myxinidae/Eptatretinae | 2608.38 | 2.98 | /36 | 1/S | — | |
| Esox lucius | Esociformes | Esocidae | 904.497 | 0.8–1.4 | 25/50 | 3/Ch | 42.2 | PB |
| Fundulus heteroclitus | Cyprinodontiformes | Fundulidae | 1021.9 | 1.3–1.5 | -/48 | 1/S | 41.2 | |
| Gadus morhua | Gadiformes | Gadidae | 824.311 | 0.4–0.9 | -/46 | 2/S | 46.3 | 454, I, PB [124] |
| Gasterosteus aculeatus | Perciformes | Cottiodei, Gasterosteid. | 446.611 | 0.6–0.7 | —/42 | 2/S, Ch | 44.6 | LM [163] |
| Haplochromis burtoni | Perciformes × Cichliformes | Cichlidae (Afr.) | 831.412 | 0.97 | —/40 | 1/S | 41.9 | |
| Hippocampus comes | Syngnathiformes | Syngnathidae | 493.776 | — | — | 1/S | 43.7 | |
| Ictalurus punctatus | Siluriformes | Ictaluridae | 783.275 | 1.0 | 29/58 | 1/Ch | 39.8 | PB, I [164,165] |
| Kryptolebias marmoratus | Cyprinodontiformes | Rivulidae | 680.367 | — | —/48 | 2/S | med 39.5 | |
| Labeotropheus fuelleborni | Perciformes × Cichliformes | Cichlidae (Afr.) | 70.8584 | — | —/44 | 1/S | 42.1 | |
| Labrus bergylta | Labriformes | Labridae | 805.481 | — | — | 1/S | 40.9 | |
| Larimichthys crocea | Acanthuriformes | Sciaenidae | 678.938 | — | — | 2/S | med 41.4 | |
| Lates calcarifer | Perciformes | Centropomidae | 668.481 | 0.7 | —/48 | 2/S | med 40.6 | |
| Latimeria chalumnae | Ceolacanthiformes | Coelacanthidae | 2860.59 | 2.8–6.6 | —/48 | 2/S | med 42.5 | |
| Lepisosteus oculatus | Lepisosteiformes | Lepisosteidae | 945.878 | 1.4 | 29/58 | 1/Ch | 40.4 | |
| Lethenteron camtschaticum | Petromyzontiformes | Petromyzontidae | 1030.66 | ~1.4 | —/144-162 | 1/S | 48.1 | |
| Leuciscus waleckii | Cypriniformes | Cyprinidae | 752.539 | congeners 1.2–1.5 | —/50 | 1/S | 37.4 | |
| Leucoraja erinacea | Rajiformes | Rajidae | 1555.46 | 3.5–4.6 | — | 1/C | 40.3 | |
| Maccullochella peelii | Perciformes × | Percichthyidae | 633.241 | 0.83 | — | 1/S | — | |
| Maylandia zebra | Perciformes × Cichliformes | Cichlidae (Afr.) | 859.842 | — | — | 2/S | 41.4 | |
| Mchenga conophoros | Perciformes × Cichliformes | Cichlidae (Afr.) | 73.4256 | — | — | 1/S | 41.8 | |
| Megalobrama amblycephala | Cypriniformes | Cyprinidae, Cultrinae | 1116.0 | 1.12–1.35 | — | 1/D | 37.3 | [166] |
| Melanochromis auratus | Perciformes × Cichliformes | Cichlidae (Afr.) | 68.2386 | — | —/46 | 1/S | 41.5 | |
| Miichthys miiuy | Acanthuriformes | Sciaenidae | 619.301 | — | — | 1/S | 39.3 | |
| Mola mola | Tetraodontiformes | Molidae | 639.452 | 0.8–0.9 | —/46 | 1/S | 41.2 | [167] |
| Monopterus albus | Synbranchiformes | Synbranchidae | 684.144 | 0.6–0.9 | —/24 | 1/S | 41.5 | |
| Morone saxatilis | Moroniformes | Moronidae | 585.167 | 0.9 | —/48 | 1/S | 40.0 | |
| Neolamprologus brichardi | Perciformes × Cichliformes | Cichlidae (Afr.) | 847.91 | — | - | 1/S | 42 | |
| Nothobranchius furzeri | Cyprinodontiformes | Notobranchiidae | 1132.74 | 1.56 | 19/38 | 4/S, Chr | 43, 8 | |
| Nothobranchius kuhntae | Cyprinodontiformes | Notobranchiidae | 5.23461 | — | —/38 | 1/S | 44.8 | |
| Notothenia coriiceps | Perciformes | Nototheniidae | 636.614 | — | — | 1/S | 40.8 | |
| Oncorhynchus kisutch | Salmoniformes | Salmonidae | 2369.93 | 2.6–3.0 | 30/60 | 1/Ch | 43.6 | |
| Oncorhynchus mykiss | Salmoniformes | Salmonidae | 2179 | 1.9–2.9 | 29/60 | 2/Ch | med 43.7 | |
| Oreochromis niloticus | Perciformes × Cichliformes | Cichlidae (Afr.) | 1009.86 | 0.9–1.2 | 23/44 | 2/Ch | med 39.9 | PB, I [168,169] |
| Oryzias latipes | Beloniformes | Adrianichthyidae | 869.818 | 0.9–1.1 | 24/48 | 5/Ch | med 40.8 | |
| Pampus argenteus | Scombriformes | Stromateidae | 350.449 | — | — | 1/S | 38.2 | |
| Paralichthys olivaceus | Pleuronectiformes | Paralichthyidae | 643.911 | 0.7 | 24/46–48 | 2/S, Ch | med 42.4 | |
| Periophthalmodon schlosseri | Gobiiformes | Gobiid., Oxudercinae | 679.761 | 0.96 | — | 1/S | 40.2 | |
| Periophthalmus magnuspinnatus | Gobiiformes | Gobiid., Oxudercinae | 701.697 | — | — | 1/S | 40 | |
| Petromyzon marinus | Petromyzontiformes | Petromyzontidae | 885.535 | 1.6–2.4 | —/168 | 1/S | 46.8 | |
| Pimephales promelas | Cypriniformes | Cyprinidae | 1219.33 | 1.1 | —/50 | 2/S | med 40.6 | |
| Poecilia formosa | Cyprinodontiformes | Poeciliidae | 748.923 | 0.75–0.97 | —/46 | 1/S | 39.6 | |
| Poecilia latipinna | Cyprinodontiformes | Poeciliidae | 815.145 | 0.9–1.0 | —/46 | 1/S | 40.8 | |
| Poecilia mexicana | Cyprinodontiformes | Poeciliidae | 801.711 | 0.7–1.38 | —/46 | 1/S | 40.7 | |
| Poecilia reticulata | Cyprinodontiformes | Poeciliidae | 731.622 | 0.77–1.0 | 23/46 | 1/Ch | 40.3 | |
| Protosalanx hyalocranius | Osmeriformes | Salangidae | 525 | — | — | 1/D | — | |
| Pseudopleuronectes yokohamae | Pleuronectiformes | Pleuronectidae | 547.831 | 0.67 | —/48 | 1/C | 42 | |
| Pundamilia nyererei | Perciformes × Cichliformes | Cichlidae (Afr.) | 830.133 | — | — | 1/S | 41.9 | |
| Pygocentrus nattereri | Characiformes | Serrasalmidae | 1285.35 | — | — | 1/S | 40.6 | |
| Rhamphochromis esox | Perciformes × Cichliformes | Cichlidae (Afr.) | 71.2951 | — | — | 1/S | 42.3 | |
| Rhincodon typus | Orectolobiformes | Rhincodontidae | 2931.6 | — | — | 1/S | 41.8 | |
| Salmo salar | Salmoniformes | Salmonidae | 2966.89 | 3.0–3.3 | 29/60 | 1/Ch | 43.9 | PB, I, S [170] |
| Scartelaos histophorus | Gobiiformes | Gobiid., Oxudercinae | 695.009 | — | — | 1/S | 39.1 | |
| Scleropages formosus | Osteoglossiformes | Osteoglossidae | 777.359 | — | — | 4/S, Chr | med 43.9 | |
| Sebastes aleutianus | Scorpaeniformes | Sebastidae | 899.65 | — | — | 1/S | 40.9 | |
| Sebastes minor | Scorpaeniformes | Sebastidae | 681.653 | — | — | 1/S | 40.8 | |
| Sebastes nigrocinctus | Scorpaeniformes | Sebastidae | 746.045 | — | — | 1/S | 40.8 | |
| Sebastes rubrivinctus | Scorpaeniformes | Sebastidae | 756.297 | — | — | 1/S | 40.7 | |
| Sebastes steindachneri | Scorpaeniformes | Sebastidae | 648.011 | — | — | 1/S | 40.7 | |
| Seriola dumerili | Carangiformes | Carangidae | 677.67 | 0.74 | — | 1/S | 40.9 | |
| Seriola lalandi | Carangiformes | Carangidae | 685 | — | — | 1/S | - | PB, I |
| Seriola quinqueradiata | Carangiformes | Carangidae | med 750.45 | 0.83 | — | 2/S | 40.25 | |
| Sinocyclocheilus anshuiensis | Cypriniformes | Cyprinidae | 1632.72 | — | — | 1/S | 38 | |
| Sinocyclocheilus grahami | Cypriniformes | Cyprinidae | 1750.29 | 2.35 | —/96 | 1/S | 38.7 | |
| Sinocyclocheilus rhinocerous | Cypriniformes | Cyprinidae | 1655.79 | — | — | 1/S | 38.1 | |
| Squalius pyrenaicus | Cypriniformes | Cyprinidae | 48.1393 | 2.4 | —/50 | 1/C | 51.8 | |
| Stegastes partitus | Ovalentaria | Pomacentridae | 800.492 | — | — | 1/S | 42.1 | |
| Takifugu flavidus | Tetraodontiformes | Tetraodontidae | 378.032 | — | — | 1/S | 45.6 | |
| Takifugu rubripes | Tetraodontiformes | Tetraodontidae | 391.485 | 0.4 | 22/44 | 1/Ch | 45.8 | |
| Tetraodon nigroviridis | Tetraodontiformes | Tetraodontidae | 342.403 | 0.35–0.51 | 21/42 | 7/S, Ch | 46.6 | Genoscope |
| Thunnus orientalis | Scombriformes | Scombridae | 684.497 | — | —/48 | 1/C | 39.7 | |
| Xiphophorus couchianus | Cyprinodontiformes | Poeciliidae | 708.396 | 0.75 | — | 1/S | 40.9 | |
| Xiphophorus hellerii | Cyprinodontiformes | Poeciliidae | 733.802 | 0.7–1.0 | —/48 | 1/S | 41.2 | |
| Xiphophorus maculatus | Cyprinodontiformes | Poeciliidae | 729.664 | 0.8–1.0 | —/48 | 1/S | 39.8 |
a orders and families mostly based on [22]; b c-value, based on [12] database; c n: based on genomic/sequence data, originates from NCBI, 2n based on cytogenetic data [86]; d number of assemblies currently released and level of assembly (C = contig, D = draft, S = scaffold, Ch = chromosomal level); e Sequencing methods (I = Illumina, PB = PacBio, S = Sanger), linkage map (LM) available.