Table 2.
Summary of Illumina transcriptome reads mapped to the reference genes (≤ 5 bp mismatch)
| Reads number(%) | ||||
|---|---|---|---|---|
| LCK | LLP | RCK | RLP | |
| Total reads | 46,784,432 | 48,816,718 | 43,588,908 | 46,760,112 |
| Total BasePairs | 4,678,443,200 | 4,881,671,800 | 4,358,890,800 | 4,676,011,200 |
| Total mapped reads | 29,634,341 (63.34) | 31,008,106 (63.52) | 26,743,293 (61.35) | 29,478,172 (63.04) |
| Perfect match | 22,232,426 (47.52) | 23,129,717 (47.38) | 19,983,467 (45.85) | 21,989,061 (47.03) |
| ≤ 5 bp mismatch | 7,401,915 (15.82) | 7,878,389 (16.14) | 6,759,826 (15.51) | 7,489,111 (16.02) |
| Unique match | 17,816,293 (38.08) | 18,899,219 (38.71) | 16,812,042 (38.57) | 18,502,324 (39.57) |
| Multi-position match | 11,818,048 (25.26) | 12,108,887 (24.80) | 9,931,251 (22.78) | 10,975,848 (23.47) |
| Total unmapped reads | 17,150,091 (36.66) | 17,808,612 (36.48) | 16,845,615 (38.65) | 17,281,940 (36.96) |