. 2017 Jun 6;68(13):3557–3571. doi: 10.1093/jxb/erx168

Table 2.

The most up- and down-regulated genes 2 h after treatment with IDL7-EPIP peptide (P<0.05)

Genes with expression ratios of log₂>1.0 or log₂< –1.5 are listed

Description	Locus	Log ₂ fold change	Variance	Adjusted P-value
ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	At3g47340	1.519	0.252	0.013
SPla/RYanodine receptor (SPRY) domain-containing protein^a	At4g06536	1.279	0.125	0.010
ADS1 (DELTA 9 DESATURASE 1)^b	At1g06080	1.218	0.218	0.033
SAUR26 (SMALL AUXIN UP RNA 26)^b	At3g03850	1.200	0.022	0.010
ATMAGL4 (MONOACYLGLYCEROL LIPASE 4)^b	At1g73480	1.151	0.231	0.023
SAUR29 (SMALL AUXIN UP RNA 29)^a,b	At3g03820	1.127	0.077	0.008
Unknown protein^a	At4g33467	1.111	0.457	0.015
HMT3 (HOMOCYSTEINE S-METHYLTRANSFERASE 3)^a	At3g22740	1.097	0.084	0.017
A_thal_3526 family protein^a,b	At3g55240	1.030	0.034	0.013
P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1)^a	At2g39800	1.023	0.057	0.013
IAA29 (INDOLEACETIC ACID-INDUCED PROTEIN 29)^b	At4g32280	1.019	0.067	0.010
CYP96A12 (Cytochrome P450 96A12)^a	At4g39510	1.011	0.110	0.016
DUF946 family protein	At2g44230	1.009	0.086	0.020
ABC transporter-related protein	At3g21080	–1.507	0.341	0.012
Protein phosphatase AP2C2^a	At1g07160	–1.523	0.280	0.021
ALAAT2 (ALANINE AMINOTRANSFERASE 2)	At1g72330	–1.532	0.252	0.023
Unknown protein^a	At2g15020	–1.537	0.028	0.008
ST (steroid sulphotransferase)	At2g03760	–1.558	0.637	0.040
DIC2 (Mitochondrial Dicarboxylate Carrier Protein 2)^a	At4g24570	–1.560	0.004	0.008
Glycine-rich protein^a	At1g07135	–1.563	0.014	0.008
Unknown protein	At5g14730	–1.571	0.244	0.017
Unknown protein^a	At1g25400	–1.582	0.440	0.012
ZAT11 (ZINC FINGER OF ARABIDOPSIS THALIANA 11)^a	At2g37430	–1.584	0.275	0.012
UGT73C3 (UDP-GLUCOSYL TRANSFERASE 73C3)	At2g36780	–1.605	0.375	0.029
ZAT8 (ZINC FINGER OF ARABIDOPSIS THALIANA 8)	At3g46080	–1.616	0.607	0.025
Unknown protein	At4g08555	–1.636	0.930	0.036
VQ12 VQ motif-containing protein	At2g22880	–1.643	0.428	0.021
UGT73C6 (UDP-GLUCOSYL TRANSFERASE 73C6)	At2g36790	–1.675	0.535	0.018
2-Oxoglutarate-dependent dioxygenase like protein	At5g43450	–1.676	0.313	0.021
Bifunctional inhibitor/lipid-transfer protein^a	At1g62500	–1.683	0.790	0.018
HSP23.5-M (23.5 kDa heat shock protein, mitochondrial)	At5g51440	–1.701	0.323	0.023
Unknown protein	At5g24640	–1.715	0.811	0.039
Unknown protein	At2g41730	–1.719	0.592	0.022
ZAT7 (ZINC FINGER OF ARABIDOPSIS THALIANA 7)^a	At3g46090	–1.774	0.263	0.013
WRKY40 (WRKY TRANSCRIPTION FACTOR 40)^a	At1g80840	–1.798	0.178	0.012
ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6)^a,b	At5g04340	–1.809	0.114	0.011
Chaperone DnaJ-domain superfamily protein^a	At1g72416	–1.840	0.226	0.014
WRKY33 (WRKY TRANSCRIPTION FACTOR 33)^a	At2g38470	–1.842	0.204	0.008
PIP1 (PAMP-INDUCED SECRETED PEPTIDE 1)^a	At4g28460	–1.844	0.733	0.040
Acyl-CoA N-acetyltransferase^a	At2g32020	–1.855	0.867	0.047
Ethylene-responsive transcription factor ERF105^a	At5g51190	1.856	0.219	0.008
HSP15.4 (Heat shock protein class V 15.4)^a	At4g21870	–1.913	0.044	0.008
AGC2-1/OXI1 (OXIDATIVE SIGNAL-INDUCIBLE 1)^a	At3g25250	–1.930	0.509	0.028
Unknown protein	At4g12735	–1.979	0.720	0.029
Eukaryotic aspartyl protease family protein	At5g48430	–1.984	0.020	0.008
CYP81D8 (Cytochrome P450 81D8)	At4g37370	–1.989	0.796	0.026
AtOM66 (Outer mitochondrial membrane protein of 66 kDa)	At3g50930	–2.102	0.760	0.031
ATPP2-A5 (PHLOEM PROTEIN 2-LIKE A5)^a	At1g65390	–2.120	0.127	0.001
COG4129-domain protein^a	At3g09450	–2.136	0.099	0.008
UGT74E2 (UDP-GLUCOSYL TRANSFERASE 74E2)	At1g05680	–2.151	1.090	0.048
DUF295-domain protein	At5g55150	–2.202	1.096	0.043
ZAT10/STZ (SALT-TOLERANCE ZINC FINGER)^a	At1g27730	–2.215	0.137	0.008
ZAT12 /RHL41 (RESPONSIVE TO HIGH LIGHT 41)	At5g59820	–2.359	0.619	0.013
CML38 (CALMODULIN-LIKE PROTEIN 38)^a	At1g76650	–2.456	0.121	0.008

^aSignificantly regulated 2 h after treatment with IDL6 peptide (P<0.1).

^bIdentified as PIF-regulated PIF4 target gene (Oh et al., 2012).