Table 1.

Genes that were detected and that have been filtered (minimal coverage of two reads per exon or intron) by the EISA pipeline and the number of genes differentially transcribed between young and expanded leaves (FDR ≤0.05) in the two Cleomaceae species The proportion of genes DT compared with the total number of genes can be found within the brackets. Differential expression of genes was calculated between young and expanded leaves using EBSeq. Overlaps between EISA and EBSeq output are shown in Fig. 2.

Differential transcription (EISA)	G. gynandra	T. hassleriana
Total no. of genes	23 340	22 227
Genes selected for EISA	4 769	5 720
Post-transcriptionally regulated (FDR ≤0.05)	678 (15%)	263 (5%)
Differential expression (EBSeq)
No of genes DE (FC ≥2, PPDE ≥0.95)	8 855	6 672
Up in young leaves	3 949	2,756
Up in expanded leaves	4 906	3,916