Table 2.
cc,a Strain Designationa | Isolation Time Point | Total Carriage Isolates (n = 32) |
Invasive Isolates, 2015–2016 (n = 104) |
Total Carriage and Invasive Isolates (n = 136) | ||
---|---|---|---|---|---|---|
Sep 2015 (n = 14) |
Nov 2015 (n = 8) |
Mar 2016 (n = 10) |
||||
cc23 | ||||||
Y: P1.5-1,10-1: F4-1: ST-1655 (cc23) | 4 | 0 | 1 | 5 | 40 | 45 |
Y: P1.5-1,10-4: F4-1: ST-23 (cc23) | 2 | 3 | 0 | 5 | 7 | 12 |
Y: P1.5-1,10-1: F4-1: ST-ND (cc23) | 0 | 0 | 0 | 0 | 12 | 12 |
Y: P1.5-2,10-1: F4-1: ST-23 (cc23) | 0 | 0 | 0 | 0 | 9 | 9 |
Y: P1.5-1,10-4: F4-1: ST-1655 (cc23) | 1 | 0 | 2 | 3 | 4 | 7 |
Y: P1.5-1,10-1: F4-1: ST-12176 (cc23) | 1 | 1 | 2 | 4 | 1 | 5 |
Y: P1.5-1,10-4: F4-1: ST-ND (cc23) | 0 | 0 | 0 | 0 | 5 | 5 |
Y: P1.5-1,10-1: F4-1: ST-11754 (cc23) | 0 | 0 | 0 | 0 | 3 | 3 |
Y: P1.5-1,10-10: F4-1: ST-1655 (cc23) | 2 | 0 | 0 | 2 | 0 | 2 |
Y: P1.5-1,10-8: F4-1: ST-1655 (cc23) | 1 | 0 | 1 | 2 | 0 | 2 |
Otherb | 1 | 2 | 1 | 4 | 12 | 16 |
Non-cc23 | ||||||
Y: P1.21,16: F3-7: ST-1466 (cc174) | 0 | 0 | 0 | 0 | 3 | 3 |
Y: P1.18-7,9: F3-9: ST-ND (cc103) | 0 | 1 | 1 | 2 | 0 | 2 |
Y: P1.5-1,10-4: F3-4: ST-10730 (cc167) | 0 | 0 | 0 | 0 | 2 | 2 |
Y: P1.5-1,10-22: F5-1: ST-ND (cc22) | 0 | 0 | 0 | 0 | 2 | 2 |
Otherc | 2 | 1 | 2 | 5 | 4 | 9 |
Abbreviations: cc, clonal complex; ST, sequence type.
Derived from genome sequence data.
Includes all cc23 strain designations occurring only once.
Includes all non-cc23 strain designations occurring only once.