Table 4. Allele frequencies of mutation loci in EGLN3 and PPARα genes.
| Genes | SNP | Allele distribution | P-Value5 | MAF6 | ||
|---|---|---|---|---|---|---|
| Allele | TC1 | LC2 | ||||
| EGLN3 | SNP rs316017491 | C | 183(0.614)3 | 143(0.572) 3 | 0.361 | 0.40511 |
| T | 115(0.386) | 107(0.428) | ||||
| PPARα | SNP1 (A294104G) |
A | 243(0.929) | 221(0.944) | 0.596 | 0.06262 |
| G | 18(0.071) | 13(0.056) | ||||
| SNP2 rs13886097 |
T | 54(0.215) | 24(0.103) | 0.001** | 0.16049 | |
| C | 198(0.785) | 210(0.897) | ||||
| SNP3 (T29467C) |
T | 42(0.166) | 2(0.009) | 0.000** | 0.09053 | |
| C | 210(0.834) | 232(0.991) | ||||
| SNP4 rs735915170 |
T | 267(0.862) | 190(0.896) | 0.293 | 0.12452 | |
| A | 43(0.138) | 22(0.104) | ||||
| SNP5 rs736599044 |
A | 264(0.852) | 190(0.890) | 0.176 | 0.13027 | |
| G | 46(0.148) | 22(0.104) | ||||
| SNP6 rs740077421 |
C | 267(0.861) | 199(0.939) | 0.008** | 0.10727 | |
| T | 43(0.139) | 13(0.061) | ||||
1TC Tibetan chickens.
2LC Lowland chickens.
3The figures in brackets represent allele frequencies.
4 The number represents the SNP position in the DNA sequence.
5 Pearson’s Chi-square test.
6MAF represents the minor allele frequency.
** P-value less than 0.01.