Fig. 3.

Genetic differentiation between Theileria parva populations in each buffalo. Principal co-ordinate analysis was performed to illustrate the genetic relationship between the parasite populations present within each buffalo. Allele-sharing matrices were generated for each of the six antigen genes based on Jaccard’s similarity index and an average was taken across all genes (Supplementary Table S3) which was used to perform the principal co-ordinate analysis. The proportion of the variation in the dataset explained by each axis is shown in parentheses.