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. 2018 Mar 7;97(5):1078–1093.e6. doi: 10.1016/j.neuron.2018.01.027
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

anti-CYFIP2 Abcam Cat# ab79716, RRID: AB_10673468
anti-CYFIP1 Abcam Cat# ab108220, RRID: AB_10859239
anti-NCKAP1 Abcam Cat# ab140856, RRID: AB_2721067
anti-xFXR Huot et al., 2005 N/A
anti-ELAVLs Santa Cruz Biotechnology Cat# sc-5261, RRID: AB_627770
Anti-RPL10a Proteintech Group Cat# 16681-1-AP, RRID: AB_2181281
Anti-RPS3A Proteintech Group Cat# 14123-1-AP, RRID: AB_2253921
anti-puromycin Millipore Cat# MABE343, RRID: AB_2566826
anti-tubulin Sigma-Aldrich Cat# T6074, RRID: AB_477582
Anti-GFP Abcam Cat# ab6556, RRID: AB_305564
HRP-conjugated secondary antibody Abcam Cat# ab6789, RRID: AB_955439
HRP-conjugated secondary antibody Abcam Cat# ab97080,
RRID: AB_10679808

Chemicals, Peptides, and Recombinant Proteins

Cycloheximide Sigma-Aldrich Cat# C4859
Rapamycin Calbiochem Cat# 553210
Cytochalasin D Sigma-Aldrich Cat# C8273
Cy3-UTP PerkinElmer Cat# NEL582001EA
1,1’-Dioctadecyl-3,3,3′,3′-Tetramethylindocarbocyanine Perchlorate (Dil) Thermo Fisher Scientific Cat# D282
3,3′-dioctadecyloxacarbocyanine perchlorate (DiO) Thermo Fisher Scientific Cat# D275
Puromycin Sigma-Aldrich Cat# P8833
Dynabeads Protein G Life Technologies Cat# 10004D

Critical Commercial Assays

mMESSAGE mMACHINE SP6 Transcription Kit Thermo Fisher Scientific Cat# AM1340
Gibson Assembly cloning kit New England BioLabs Cat# E5510S
QuikChange II Site-directed Mutagenesis Kit Agilent Technologies Cat# 200555
RNeasy Mini Kit QIAGEN Cat# 74104
MEGAscript T7 transcription Kit Thermo Fisher Scientific Cat# AM1334
RNA clean & concentrator-5 Zymo Research Cat# R1016
Phire Animal Tissue Direct PCR Kit Thermo Fisher Scientific Cat# F140WH
DUOlink in situ PLA kit Sigma-Aldrich Cat# DUO92014

Experimental Models: Organisms/Strains

Xenopus laevis Nasco https://www.enasco.com/p/LM00715MX/; https://www.enasco.com/p/LM00535MX/
Zebrafish: Tg(atoh7:gapGFP) Zolessi et al., 2006 ZFIN: ZDB-ALT-070129-1
Zebrafish: zTOR Ding et al., 2011 ZFIN: ZDB-ALT-120412-1

Oligonucleotides

Morpholino: Xenopus CYFIP2 TTACCAAGTCCGGTAGCGACAGTCT Gene Tools N/A
Morpholino: Control
CCTCTTACCTCAGTTACAATTTATA
Gene Tools N/A
Morpholino: zebrafish CYFIP2 AGTGCATTAGGACGTGTACCTGGTA Gene Tools; Pittman et al., 2010 N/A
CYFIP1gRNA: GGAGGGCAGAGGCTCGATGC Sigma-Aldrich N/A
CYFIP2gRNA: GACAACCCACGTGACCCTGG Sigma-Aldrich N/A
Primer: sequencing zebrafish CYFIP1
5′ GCCATGTCTCACATGTGTTTTT 3′
5′ GCAGATACAGAAGAAGGGTTGC 3′
Sigma-Aldrich N/A
Primer: sequencing zebrafish CYFIP2
5′ AGGTCATGACATTTCCCTTGTC 3′
5′ TCAGTGCATTAGGACGTGTACC 3′
Sigma-Aldrich N/A

Recombinant DNA

pCS2+mGFP Das et al., 2003 N/A
pCS2+mRFP Poggi et al., 2005 N/A
pCS2+CYFIP2-GFP This paper N/A
pCS2+CYFIP2-CTD-GFP This paper N/A
pCS2+CYFIP2mutE-GFP This paper N/A
pCS2-Cas9 Addgene Cat# 47322
Xenopus CYFIP2 Source Bioscience IRBHp990E0729D
CYFIP1 Dharmcon/GE Healthcare MHS6278-202827458
CYFIP2 Source Bioscience IRAUp969A0861D

Software and Algorithms

Volocity v.6.3.1 Volocity 3D Image Analysis Software, RRID: SCR_002668
Fiji v.2.0.0-rc-43/1.51n Fiji, RRID: SCR_002285
GraphPad PRISM v.6.01 GraphPad Prism, RRID: SCR_002798
ND-SAFIR Boulanger et al., 2010 http://serpico.rennes.inria.fr/doku.php?id=software:nd-safir:index