REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
anti-CYFIP2 | Abcam | Cat# ab79716, RRID: AB_10673468 |
anti-CYFIP1 | Abcam | Cat# ab108220, RRID: AB_10859239 |
anti-NCKAP1 | Abcam | Cat# ab140856, RRID: AB_2721067 |
anti-xFXR | Huot et al., 2005 | N/A |
anti-ELAVLs | Santa Cruz Biotechnology | Cat# sc-5261, RRID: AB_627770 |
Anti-RPL10a | Proteintech Group | Cat# 16681-1-AP, RRID: AB_2181281 |
Anti-RPS3A | Proteintech Group | Cat# 14123-1-AP, RRID: AB_2253921 |
anti-puromycin | Millipore | Cat# MABE343, RRID: AB_2566826 |
anti-tubulin | Sigma-Aldrich | Cat# T6074, RRID: AB_477582 |
Anti-GFP | Abcam | Cat# ab6556, RRID: AB_305564 |
HRP-conjugated secondary antibody | Abcam | Cat# ab6789, RRID: AB_955439 |
HRP-conjugated secondary antibody | Abcam | Cat# ab97080, RRID: AB_10679808 |
Chemicals, Peptides, and Recombinant Proteins | ||
Cycloheximide | Sigma-Aldrich | Cat# C4859 |
Rapamycin | Calbiochem | Cat# 553210 |
Cytochalasin D | Sigma-Aldrich | Cat# C8273 |
Cy3-UTP | PerkinElmer | Cat# NEL582001EA |
1,1’-Dioctadecyl-3,3,3′,3′-Tetramethylindocarbocyanine Perchlorate (Dil) | Thermo Fisher Scientific | Cat# D282 |
3,3′-dioctadecyloxacarbocyanine perchlorate (DiO) | Thermo Fisher Scientific | Cat# D275 |
Puromycin | Sigma-Aldrich | Cat# P8833 |
Dynabeads Protein G | Life Technologies | Cat# 10004D |
Critical Commercial Assays | ||
mMESSAGE mMACHINE SP6 Transcription Kit | Thermo Fisher Scientific | Cat# AM1340 |
Gibson Assembly cloning kit | New England BioLabs | Cat# E5510S |
QuikChange II Site-directed Mutagenesis Kit | Agilent Technologies | Cat# 200555 |
RNeasy Mini Kit | QIAGEN | Cat# 74104 |
MEGAscript T7 transcription Kit | Thermo Fisher Scientific | Cat# AM1334 |
RNA clean & concentrator-5 | Zymo Research | Cat# R1016 |
Phire Animal Tissue Direct PCR Kit | Thermo Fisher Scientific | Cat# F140WH |
DUOlink in situ PLA kit | Sigma-Aldrich | Cat# DUO92014 |
Experimental Models: Organisms/Strains | ||
Xenopus laevis | Nasco | https://www.enasco.com/p/LM00715MX/; https://www.enasco.com/p/LM00535MX/ |
Zebrafish: Tg(atoh7:gapGFP) | Zolessi et al., 2006 | ZFIN: ZDB-ALT-070129-1 |
Zebrafish: zTOR | Ding et al., 2011 | ZFIN: ZDB-ALT-120412-1 |
Oligonucleotides | ||
Morpholino: Xenopus CYFIP2 TTACCAAGTCCGGTAGCGACAGTCT | Gene Tools | N/A |
Morpholino: Control CCTCTTACCTCAGTTACAATTTATA |
Gene Tools | N/A |
Morpholino: zebrafish CYFIP2 AGTGCATTAGGACGTGTACCTGGTA | Gene Tools; Pittman et al., 2010 | N/A |
CYFIP1gRNA: GGAGGGCAGAGGCTCGATGC | Sigma-Aldrich | N/A |
CYFIP2gRNA: GACAACCCACGTGACCCTGG | Sigma-Aldrich | N/A |
Primer: sequencing zebrafish CYFIP1 5′ GCCATGTCTCACATGTGTTTTT 3′ 5′ GCAGATACAGAAGAAGGGTTGC 3′ |
Sigma-Aldrich | N/A |
Primer: sequencing zebrafish CYFIP2 5′ AGGTCATGACATTTCCCTTGTC 3′ 5′ TCAGTGCATTAGGACGTGTACC 3′ |
Sigma-Aldrich | N/A |
Recombinant DNA | ||
pCS2+mGFP | Das et al., 2003 | N/A |
pCS2+mRFP | Poggi et al., 2005 | N/A |
pCS2+CYFIP2-GFP | This paper | N/A |
pCS2+CYFIP2-CTD-GFP | This paper | N/A |
pCS2+CYFIP2mutE-GFP | This paper | N/A |
pCS2-Cas9 | Addgene | Cat# 47322 |
Xenopus CYFIP2 | Source Bioscience | IRBHp990E0729D |
CYFIP1 | Dharmcon/GE Healthcare | MHS6278-202827458 |
CYFIP2 | Source Bioscience | IRAUp969A0861D |
Software and Algorithms | ||
Volocity | v.6.3.1 | Volocity 3D Image Analysis Software, RRID: SCR_002668 |
Fiji | v.2.0.0-rc-43/1.51n | Fiji, RRID: SCR_002285 |
GraphPad PRISM | v.6.01 | GraphPad Prism, RRID: SCR_002798 |
ND-SAFIR | Boulanger et al., 2010 | http://serpico.rennes.inria.fr/doku.php?id=software:nd-safir:index |