Table 1.
Fusion Gene Transcripts involving Tumor Suppressor Genes in Breast Cancer.
| Gene_A | Gene_B | TSG | A_chr | B_chr | Junction_A | Junction_B | Frame | FusionPair |
|---|---|---|---|---|---|---|---|---|
| TSC2 | TMEM204 | TSC2 | 16 | 16 | 2098754 | 1604783 | Out-of-frame | TSC2__TMEM204 |
| ARID1A | THBS3 | ARID1A | 1 | 1 | 27059283 | 155172928 | In-frame | ARID1A__THBS3 |
| ARID1A | YTHDF2 | ARID1A | 1 | 1 | 27059283 | 29064170 | In-frame | ARID1A__YTHDF2 |
| AXIN1 | ITFG3 | AXIN1 | 16 | 16 | 402369 | 299548 | 5UTR-5UTR | AXIN1__ITFG3 |
| AXIN1 | ITCH | AXIN1 | 16 | 20 | 396148 | 32957200 | CDS-5UTR | AXIN1__ITCH |
| AXIN1 | IFT140 | AXIN1 | 16 | 16 | 354304 | 1576797 | Out-of-frame | AXIN1__IFT140 |
| CASP8 | ALS2CR12 | CASP8 | 2 | 2 | 202131514 | 202195556 | In-frame | CASP8__ALS2CR12 |
| CDH1 | CCDC132 | CDH1 | 16 | 7 | 68857529 | 92952923 | In-frame | CDH1__CCDC132 |
| CDH1 | NPFFR2 | CDH1 | 16 | 4 | 68772314 | 73003757 | In-frame | CDH1__NPFFR2 |
| CDH1 | DEXI | CDH1 | 16 | 16 | 68842751 | 11023416 | CDS-3UTR | CDH1__DEXI |
| CCDC132 | CDH1 | CDH1 | 7 | 16 | 92940584 | 68862077 | In-frame | CCDC132__CDH1 |
| ASXL1 | TM9SF4 | ASXL1 | 20 | 20 | 30956926 | 30720816 | CDS-5UTR | ASXL1__TM9SF4 |
| ASXL1 | PDRG1 | ASXL1 | 20 | 20 | 30959677 | 30536685 | 3UTR-CDS | ASXL1__PDRG1 |