Table 2.
Fusion Gene Transcripts involving Chromatin Modifier Genes in Breast Cancer.
| FusionPair | Gene_A | Gene_B | A_chr | B_chr | Junction_A | Junction_B | Frame |
|---|---|---|---|---|---|---|---|
| KDM5A__ANO2 | KDM5A | ANO2 | 12 | 12 | 427272 | 5708795 | In-frame |
| CHD4__DTX1 | CHD4 | DTX1 | 12 | 12 | 6690210 | 113515229 | In-frame |
| CTPS2__RBBP7 | CTPS2 | RBBP7 | X | X | 16716359 | 16871965 | In-frame |
| USP21__PVRL4 | USP21 | PVRL4 | 1 | 1 | 161134040 | 161042675 | In-frame |
| MANF__SETD2 | MANF | SETD2 | 3 | 3 | 51423766 | 47108608 | In-frame |
| XPC__RCOR1 | XPC | RCOR1 | 3 | 14 | 14209757 | 103177272 | In-frame |
| WNK1__KDM5A | WNK1 | KDM5A | 12 | 12 | 939326 | 432947 | In-frame |
| NSD1__CDH23 | NSD1 | CDH23 | 5 | 10 | 176563031 | 73434869 | In-frame |
| CDH23__NSD1 | CDH23 | NSD1 | 10 | 5 | 73501678 | 176618885 | In-frame |
| SMARCA4__DNM2 | SMARCA4 | DNM2 | 19 | 19 | 11136184 | 10930656 | In-frame |
| KDM5A__NINJ2 | KDM5A | NINJ2 | 12 | 12 | 404739 | 675344 | In-frame |
| MLL3__CLIP2 | MLL3 | CLIP2 | 7 | 7 | 151871216 | 73811404 | In-frame |
| B4GALT7__NSD1 | B4GALT7 | NSD1 | 5 | 5 | 177035623 | 176618885 | In-frame |
| MBD2__DOCK2 | MBD2 | DOCK2 | 18 | 5 | 51715244 | 169502951 | In-frame |
| CREBBP__NUBP1 | CREBBP | NUBP1 | 16 | 16 | 3819175 | 10846467 | In-frame |
| ARHGEF17__EP300 | ARHGEF17 | EP300 | 11 | 22 | 73022875 | 41545042 | In-frame |
| HDAC1__KPNA6 | HDAC1 | KPNA6 | 1 | 1 | 32790154 | 32620189 | In-frame |
| TBC1D9__SMARCA5 | TBC1D9 | SMARCA5 | 4 | 4 | 141560240 | 144438508 | In-frame |
| TET3__DGUOK | TET3 | DGUOK | 2 | 2 | 74317174 | 74184252 | In-frame |
| USP22__MYO19 | USP22 | MYO19 | 17 | 17 | 20945978 | 34852250 | In-frame |
| KDM4B__UHRF1 | KDM4B | UHRF1 | 19 | 19 | 5144913 | 4929234 | In-frame |
| MYSM1__APOM | MYSM1 | APOM | 1 | 6 | 59160801 | 31624249 | In-frame |
| HDAC2__TRDN | HDAC2 | TRDN | 6 | 6 | 114292021 | 123545276 | In-frame |
| ARID1A__THBS3 | ARID1A | THBS3 | 1 | 1 | 27059283 | 155172928 | In-frame |
| TET3__C2orf78 | TET3 | C2orf78 | 2 | 2 | 74275538 | 74040604 | In-frame |
| NSD1__ZNF346 | NSD1 | ZNF346 | 5 | 5 | 176619020 | 176489059 | In-frame |
| ARID1A__YTHDF2 | ARID1A | YTHDF2 | 1 | 1 | 27059283 | 29064170 | In-frame |
| SETDB1__PKP4 | SETDB1 | PKP4 | 1 | 2 | 150915164 | 159477502 | In-frame |
| TRAF3__RCOR1 | TRAF3 | RCOR1 | 14 | 14 | 103342862 | 103173688 | In-frame |
| KDM2A__RHOD | KDM2A | RHOD | 11 | 11 | 66888829 | 66833367 | In-frame |
| SCMH1__EIF2B3 | SCMH1 | EIF2B3 | 1 | 1 | 41578955 | 45316675 | In-frame |
| CREBBP__ZNF500 | CREBBP | ZNF500 | 16 | 16 | 3929833 | 4803059 | In-frame |