| B2M | Β-2 microglobulin |
| BMP-4 | Bone morphogenetic protein 4 |
| ChiPS | Chondrocyte-like cells differentiated from human induced pluripotent stem cells |
| CER1 | Cerbeus, DAN family BMP antagonist |
| c-Myc | MYC proto-oncogene |
| DAVID | Database for Annotation, Visualization and Integrated Discovery |
| DPPA4 | Developmental pluripotency associated 4 |
| EBs | Embryoid bodies |
| ESRG | Embryonic stem cell related (non-protein coding) |
| FGF-2 | Basic fibroblasts growth factor |
| GEO | Gene Expression Omnibus |
| GFs | Growth factors |
| GO | Gene Ontology |
| GPCCi001-A | Human induced pluripotent stem cell line created in Greater Poland Cancer Centre |
| hESCs | Human embryonic stem cells |
| hiPSCs | Human induced pluripotent stem cells |
| HIST1H3A | Histone cluster 1 H3 family member a |
| HIST1H3I | Histone cluster 1 H3 family member i |
| HIST1H2BM | Histone cluster 1 H2B family member m |
| HOTAIRM1 | HOXA transcript antisense RNA, myeloid-specific 1 |
| HOXA | Homeobox A cluster |
| IGF-1 | Insulin-like growth factor 1 |
| KLF4 | Kruppel-like factor 4 |
| LIN28A | Lin-28 homolog A |
| L1TD1 | LINE 1 type transposase domain |
| NANOG | Nanog homeobox |
| NODAL | Nodal growth differentiation factor |
| NPC | Neural precursor cells |
| OCT4 | Octamer-binding transcription factor 4 |
| PDGF | Platelet-derived growth factor |
| POU5F1 | POU class 5 homeobox 1 |
| PRDM14 | PR/SET domain 14 |
| PWAR5 | Prader Willi/Angelman region RNA 5 |
| PWARSN | Prader Willi/Angelman region RNA, SNRPN neighbor |
| REX1 | Ring-exported protein 1 |
| RMA | Robust Multiarray Average |
| RNU5B-1 | RNA, U5B small nuclear 1 |
| RNA5SP221 | RNA, 5S ribosomal pseudogene 221 |
| SALL4 | Spalt like transcription factor 4 |
| SCARNA1 | Small Cajal body-specific RNA 1 |
| SCARNA8 | Small Cajal body-specific RNA 8 |
| SCARNA23 | Small Cajal body-specific RNA 23 |
| SCs | Stem Cells |
| SFRP2 | Secreted frizzled related protein 2 |
| SNORA14B | Small nucleolar RNA, H/ACA box 14B |
| SNORD116-21 | Small nucleolar RNA, C/D box 116-21 |
| SNORD116-1 | Small nucleolar RNA, C/D box 116-1 |
| SNORD116-30 | Small nucleolar RNA, C/D box 116-30 |
| SOX2 | SRY (Sex determining region Y)-box 2 |
| SOX6 | SRY (Sex determining region Y)-box 6 |
| SOX9 | SRY (Sex determining region Y)-box 9 |
| SSEA4 | Stage-specific embryonic antigen-4 |
| TGF-β3 | Transforming growth factor β 3 |
| Wnt | Wingless-type MMTV integration site family |