AOX	Alternative oxidase
AR	Adventitious rooting
IBA	indole-3-butyric acid
AR	adventitious rooting
SNP	single nucleotide polymorphism
QTL	Quantitative Trait Locus
UTR	Untranslated region
APA	alternative polyadenylation
mRNA	Messenger Ribonucleic acid
PAS	poly(a) site
gDNA	Genomic Deoxyribonucleic acid
NCBI	National Center for Biotechnology Information
TSA	transcriptome shotgun assembly
NJ	Neighbor-Joining
RACE	Rapid amplification of cDNA ends
RT-qPCR	Reverse transcription-quantitative real time polymerase chain reaction
ORF	Open reading frame
cDNA	complementary DNA
LTR	long terminal repeats
TSD	Target site duplications
PCR	polymerase chain reaction
mTP	mitochondrial transit peptides
snoRNAs	Small nucleolar RNAs
TEs	transposable elements
NMD	nonsense-mediated decay
RBPs	RNA-binding proteins
SHAM	salicylhydroxamic acid
ROS	Reactive oxygen species
ACT	actin
EF1a	elongation factor 1a
Cq	Quantification cycle
RQ	relative quantities