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. 2018 Mar 15;25(3):309–317.e4. doi: 10.1016/j.chembiol.2017.12.012
REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and Virus Strains

ArcticExpress (DE3) competent E.coli Agilent Cat#230192

Chemicals, Peptides, and Recombinant Proteins

Brequinar sodium salt hydrate Sigma Aldrich Cat#SML0113
n-Dodecyl-N,N-Dimethylamine-N-Oxide (LDAO) Anatrace Cat#D360
1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine (POPE) Avanti Polar Lipids Cat#850757P
1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) Avanti Polar Lipids Cat#850457P
1',3'-bis[1,2-dioleoyl-sn-glycero-3-phospho]-sn-glycerol (CDL) Avanti Polar Lipids Cat#710335P
Dimethylsulfoxide (DMSO) Sigma Aldrich Cat#276855
Ammonium acetate Sigma Aldrich Cat#5.43834
H. sapiens DHODHNΔ30 Ullrich et al., 2001 N/A
3,4-Dimethoxy-5-Methyl-p-Benzoquinone Sigma Aldrich Cat#D9150

Deposited Data

Crystal structure of hDHODH with 3-amido-5-biphenyl-benzoic acid Hurt et al., 2006 PDB: 2B0M
https://www.rcsb.org/pdb/explore/explore.do?structureId=2B0M
Crystal structure of hDHODH with brequinar analogue Liu et al., 2000 PDB: 1D3G
https://www.rcsb.org/pdb/explore/explore.do?structureId=1d3g
Crystal structure of ligand-free DHODH Walse et al., 2008 PDB: 2PRM
https://www.rcsb.org/pdb/explore/explore.do?structureId=2prm

Recombinant DNA

pNIC28-Bsa4 Savitsky et al., 2010 Addgene plasmid # 26103
H. sapiens DHODHNΔ30 coding sequence (Liu et al., 2000) GeneArt N/A

Software and Algorithms

PULSAR Allison et al., 2015 http://www.pulsar.chem.ox.ac.uk
UniDec Marty et al., 2015 http://www.unidec.chem.ox.ac.uk
IMPACT Marklund et al., 2015 http://www.impact.chem.ox.ac.uk
mMass Strohalm et al., 2010 http://www.mmass.org
Xcalibur Thermo Scientific N/A
UCSF Chimera v1.11.02 Pettersen et al., 2004 http://www.cgl.ucsf.edu/chimera
PyMol Schrödinger, LLC Version 1.8 www.sourceforge.net/projects/pymol
GROMACS 2016.1 Abraham et al., 2015 http://www.gromacs.org
MemGen Knight and Hub, 2015 http://memgen.uni-goettingen.de
ModLoop Fiser and Sali, 2003 https://modbase.compbio.ucsf.edu/modloop/
AMBER99SB-ILDN force field Lindorff-Larsen et al., 2010 http://ambermd.org/#ff
FMN force field parameters Schneider and Sühnel, 1999 http://research.bmh.manchester.ac.uk/bryce/amber
POPE force field parameters and coordinates Jämbeck and Lyubartsev, 2012b http://www.fos.su.se/∼sasha/SLipids/Downloads.html

Other

Medium nanoES capillaries Thermo Scientific Cat#ES380