Table 1.
Genes Present in TCH2015 but Lacking in F. novicida U112 (LANL)
| Gen e # |
Prote in Lengt h (aa) |
Annotated Function | Gen e # |
Prote in Lengt h (aa) |
Annotated Function |
Gen e # |
Prote in Lengt h (aa) |
Annotated Function |
|---|---|---|---|---|---|---|---|---|
| 100 | 145 | Putative Nudix hydrolase YfcD (EC 3.6.-.-) | 1013 | 47 | Di-/tripeptide transporter | 1424 | 373 | ABC-type multidrug transport system, permease component |
| 169 | 340 | ATP-binding region, ATPase-like | 1130 | 326 | Inositol oxygenase (EC 1.13.99.1) | 1438 | 213 | 4′-phosphopantethe inyl transferase (EC 2.7.8.-) |
| 176 | 293 | 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) | 1132 | 473 | Uronate isomerase (EC 5.3.1.12) | 1464 | 42 | Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) |
| 447 | 109 | ATP-binding protein p271 | 1133 | 183 | 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) | 1553 | 287 | N-carbamoylputres cine amidase (3.5.1.53) / Aliphatic amidase AmiE (EC 3.5.1.4) |
| 450 | 199 | ThiJ/PfpI | 1135 | 397 | Mannonate dehydratase (EC 4.2.1.8) | 1554 | 329 | Agmatine deiminase (EC 3.5.3.12) |
| 549 | 263 | UDP-glucose 4-epimerase (EC 5.1.3.2) | 1136 | 491 | D-mannonate oxidoreductase (EC 1.1.1.57) | 1555 | 550 | Biosynthetic arginine decarboxylase (EC 4.1.1.19) |
| 550 | 279 | Glycosyl transferase, group 2 family protein | 1231 | 869 | FIG045374: Type II restriction enzyme, methylase subunit YeeA | 1556 | 290 | Spermidine synthase (EC 2.5.1.16) |
| 556 | 375 | Glycosyl transferase, family 2 | 1232 | 1253 | ATPase involved in DNA replication | 1557 | 163 | S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B |
| 557 | 350 | Capsular polysaccharide biosynthesis protein | 1233 | 46 | fic family protein | 1558 | 72 | Beta-galactosidase (EC 3.2.1.23) |
| 560 | 194 | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 1236 | 642 | FIG006126: DNA helicase, restriction/modification system component YeeB | 1576 | 291 | Homoserine O-succinyltransferase (EC 2.3.1.46) |
| 729 | 423 | O-antigen ligase | 1237 | 401 | YeeC-like protein | 1577 | 437 | O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
| 769 | 429 | Phosphoserine phosphatase (EC 3.1.3.3) | 1239 | 324 | Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) | 1579 | 122 | Secreted effector protein |
| 770 | 210 | Methyltransferase | 1240 | 169 | Antirestriction protein | 1594 | 535 | Choline dehydrogenase (EC 1.1.99.1) |
| 771 | 228 | Lipopolysaccharide cholinephosphotransf erase LicD1 (EC 2.7.8.-) | 1242 | 1095 | Reticulocyte binding-like protein 2b | 1595 | 409 | Gluconate dehydratase (EC 4.2.1.39) |
| 810 | 594 | Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) | 1243 | 241 | putative mobilization protein mobC | 1596 | 413 | Transporter, MFS superfamily |
| 811 | 351 | Glycine oxidase ThiO (EC 1.4.3.19) | 1245 | 417 | DNA primase (EC 2.7.7.-) | 1870 | 845 | Phosphoenolpyru vate carboxylase (EC 4.1.1.31) |
| 813 | 260 | Thiazole biosynthesis protein ThiG | 1250 | 419 | HipA protein | |||
| 814 | 486 | Phosphomethylpyrimidine kinase/Thiamin-phosphate pyrophosphorylase | 1339 | 370 | Alanine dehydrogenase (EC 1.4.1.1) |