Table 1.
The online public and commercial databases and compound collections used for virtual screening in epigenetics.
| Database | Size | Website | Applications |
|---|---|---|---|
| ZINC | Over 35 million | http://zinc.docking.org | GCN5; KDM4A/C; HDAC1; BRD4/T; SIRT2-3 |
| SPECS | ~320,000 | http://www.specs.net | DOT1L; DNMT1; SET7; DNMT3A; PRMT1; G9a; FTO; PRMT5; EZH2; HDAC8; LSD1; BRD4; Menin-MLL1 |
| NCI | ~260,000 | https://cactus.nci.nih.gov/ | DNMT1; Class I/IIa HDACs; KDM4A/B; BRD2 |
| Maybridge | ~56,000 | http://www.maybridge.com | LSD1; HDAC2; HDAC8 |
| ChemBridge | ~1.1 million | http://www.chembridge.com | Type I PRMTs; PRMT5; p300/CBP; BRD4; Spindlin1; SIRT3 |
| CoCoCo | ~7 million | http://cococo.isof.cnr.it | SMYD3 |
| Enamine | ~2.4 million | http://www.enamine.net | LSD1; PRMT5 |
| ChEMBL | ~1.7 million | http://www.ebi.ac.uk/chembldb/index.php | GCN5; BRD4 |
| ChemDiv | ~1.5 million | http://www.chemdiv.com | PRMT5; BRD4; Spindlin1 |
| Dictionary of Natural Products | ~40,000 | http://dnp.chemnetbase.com | BRD4 |
| ASINEX | ~87,000 | http://www.asinex.com/libraries_synergy.html/ | HDAC1 |
| InterBioScreen | ~550,000 | https://www.ibscreen.com | HDAC1 |
| eMolecules | Over 8 million | http://www.emolecules.com | BRD4; WDR5-MLL1 |
| Life chemicals | ~1.35 million | http://www.lifechemicals.com | BRD4 |
| DrugBank | ~10,000 | http://www.drugbank.ca | SIRT3 |
| WDI | ~80,000 | http://www.daylight.com/products/wdi.html | HDAC1; HDAC6 |
Data accessed in December 28, 2017.