Table 3.
Methylated motifs detected in the strain F. tularensis subsp. holarctica strain 12T0050_FLI.
| Motif | Modified position | Type | % of motif detected | Number of motifs detected | Number of motifs in genome | Mean modification QV | Mean motif coverage |
|---|---|---|---|---|---|---|---|
| GGTYDKTGV | 1 | Unknown | 38.8% | 123 | 317 | 41.68 | 58.33 |
| ADGTACTA | 1 | m6A | 37.01% | 104 | 281 | 44.12 | 54.46 |
| GNNNNVNH | 1 | Unknown | 29.61% | 97737 | 330035 | 42.05 | 54.80 |
| GBTBNRVGV | 1 | Unknown | 21.12% | 814 | 3855 | 39.24 | 56.61 |
| GSVVNNNG | 1 | Unknown | 20.28% | 2841 | 14011 | 39.48 | 55.97 |
| GNNNNTBH | 1 | Unknown | 16.28% | 20400 | 125341 | 39.88 | 55.61 |
| TNNBASYW | 1 | Unknown | 14.85% | 5951 | 40077 | 41.31 | 55.58 |
| VANDYAGYA | 2 | m6A | 13.89% | 527 | 3793 | 42.41 | 54.84 |
| CNNNNRNW | 1 | Unknown | 10.95% | 24699 | 225647 | 40.82 | 56.15 |
A mean modification Quality Value (QV) refers to the level of confidence that a base is methylated. A QV of 30 or higher is considered significant. The mean coverage for all instances where this motif was detected as modified.