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. 2018 Mar 20;6:50. doi: 10.1186/s40168-018-0437-0

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Strain-level analysis, with PanPhlAn, using the total number of reads from each sequencer. a The highest match for each of 11 mock community species for which ≥ 2 reference strain genomes are available at RefSeq, based on the presence/absence of pangenome gene families. b A comparison of the relatedness of the Lactobacillus kefiranofaciens and Leuconostoc mesenteroides strains detected in kefir samples with each of the reference strain genomes present in the respective c Statistical differences in the proportion of PanPhlAn pangenome gene families detected using each sequencer