Table 1.

The base pair prediction performance on the bacterial sRNA dataset

Program	TPR	PPV	MCC
IntaRNA	0.66	0.61	0.62
RNAplex-a (Turner)	0.63	0.56	0.58
RNAplex-a (Andronescu)	0.60	0.68	0.63
RIblast (Turner)	0.58	0.66	0.61
RIblast (Andronescu)	0.63	0.73	0.67

Note: The columns correspond to the three evaluation criteria. The rows indicate the performance of each program. The bold values are the highest scores in each column.