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. 2017 Aug 30;33(24):3922–3928. doi: 10.1093/bioinformatics/btx538

Fig. 2.

Fig. 2.

Pseudocode for the Kmer-SSR algorithm. The function passesBooleanFilter ensures SSRs are not duplicates of previously reported SSRs. The function passesUserFilters (function not shown) completes other user-specified options, which may include: minimum SSR length, minimum and maximum number of periods, finding specific SSRs and sequence length bounds