Table 2.
MS identification of sliced bands
| Band NO. | SEP NO. | Accession | Description | Detected peptide | XCorr | M.W. (kDa) |
|---|---|---|---|---|---|---|
| 1 | 1 | ENSMUSG00000032985.11 | 5730522E02Rik|processed_transcript | LPQLAAAEPNRPR | 2.22 | 10.6 |
| 2 | ENSMUSG00000085596.1 | Gm11476| processed_transcript | QLPLYQIEILVcNITAmTHPSNFSlESNQcRLSPRSQQLEcPK | 2.11 | 8.8 | |
| 3 | ENSMUSG00000028289.8 | Epha7| processed_transcript | MHLQSRLSAKR | 1.65 | 8.0 | |
| 4 | ENSMUSG00000029049.10 | Morn1 | processed_transcript | NGTGcVSPLELR | 1.09 | 6.4 | |
| 5 | ENSMUSG00000021177.11 | Tdp1|retained_intron | MVcLSFTTK | 0.75 | 1.4 | |
| 6 | ENSMUSG00000042105.14 | Inpp5f|retained_intron | MLVLPVnLPR | 1.73 | 1.3 | |
| 7 | ENSMUSG00000029647.11 | Pan3|nonsense_mediated_decay | MLLIcNQKQMHLPSSWPTSSDR | 1.47 | 2.7 | |
| 8 | ENSMUSG00000081985.1 | lincRNA 1700047M11Rik|lincRNA | SNRSLTLR | 1.05 | 1.4 | |
| 9 | ENSMUSG00000081985.1 | Gng2-ps1|processed_pseudogeiie | KLIELLKmEAnlDR | 1.05 | 6.0 | |
| 10 | ENSMUSG00000006423.11 | C330007P06Rik|retained_intron | HPPVIFVTYTHMQANTHAHKIR | 1.36 | 6.3 | |
| 11 | ENSMUSG00000059974.6 | Ntm|processed_transcript | TTQAKMHnSISWAIFTGLAALcLFQGK | 1.49 | 3.2 | |
| 2 | 3 | ENSMUSG00000028289.8 | Epha7|processed_transcript | MHLQSRLSAKR | 1.65 | 8.0 |
| 12 | ENSMUSG00000031634.8 | Ufsp2|processed_transcript | mISSKPIER | 1.66 | 2.8 | |
| 1 | ENSMUSG00000032985.11 | 5730522E02Rik|procssed_transcript | LPQLAAAEPNRPR | 1.60 | 10.6 | |
| 3 | 13 | ENSMUSG00000054693.10 | Adam10|nonsense_mediated_decay | KEALVmGLSLMEDLKVSSR | 0.90 | 9.6 |
| 14 | ENSMUSG00000035953.9 | Tmem55b|retained_intron | HFPRSLRDIQPccLER | 1.28 | 3.4 | |
| 15 | ENSMUSG000000103242.1 | RP23-132G24.3|processed_pseudogene | MAEAIYIIEVKEWGK | 1.33 | 2.5 | |
| 4 | 16 | ENSMUSG00000085553.1 | antisense Gm14808|antisense | QnNHGGWLWVPKEScALGR | 1.65 | 7.4 |
| 12 | ENSMUSG00000031634.8 | Ufsp2|processed_transcript | mISSKPIER | 1.65 | 2.8 | |
| 17 | ENSMUSG00000048215.10 | lincRNA A630023P12Rik|lincRNA | SQNFSWImLLcPSQM | 0.47 | 4.9 | |
| 18 | ENSMUSG00000086528.1 | antisense Gm15731|antisense | TIQKAPPHYmSIELR | 1.60 | 4.1 | |
| 19 | ENSMUSG00000102503.1 | TEC RP23-388I22.1|TEC | mYYLVKmScYmKcLR | 0.32 | 2.7 | |
| 5 | 20 | ENSMUSG00000085865.1 | lincRNA Gm15966|lincRNA | SASSWNQPLPGPSGFGLEEVSREGGWR | 3.36 | 5.8 |
| 21 | ENSMUSG00000081123.1 | Gm11469|processed_pseudogene | EGVNIAEAIER | 1.60 | 10.1 | |
| 4 | ENSMUSG00000029049.10 | Morn1|processed_transcript | NGTGcVSPLELR | 1.45 | 6.4 | |
| 22 | ENSMUSG00000053199.9 | Arhgap20|retained_intron | QSTVKcWRPFQmSHmQTFmK | 1.15 | 7.7 | |
| 23 | ENSMUSG00000029464.6 | Gpn3|retained_intron | PGGAERnSR | 0.78 | 2.4 | |
| 24 | ENSMUSG00000098033.1 | Gm9381|processed_pseudogene | IVSnAScTTncIVLLAKVIFGmTTLALER | 1.69 | 9.3 | |
| 25 | ENSMUSG00000102240.1 | TEC RP23-242B14.1|TEC | mNLKILTYVcFASQRQTIYLENR | 2.21 | 5.5 | |
| 26 | ENSMUSG00000020063.12 | Sirt1|nonsense_mediated_decay | mVFHTFLFVTLnSLK | 1.06 | 3.1 | |
| 11 | ENSMUSG00000059974.6 | Ntm|processed_transcript | TIQAKMHnSISWAIFTGLAALcLFQGK | 2.30 | 3.2 | |
| 6 | 27 | ENSMUSG00000024073.10 | Birc6|retained_intron | QLFLVEnKNLNIIIPmFYcFFPIR | 1.22 | 11.3 |
| 28 | ENSMUSG00000057406.12 | Whsc1|nonsense_mediated_decay | SLPSQKcSPKYSENEAR | 0.83 | 3.9 | |
| 29 | ENSMUSG00000031559.10 | 4930555F03Rik|processed_transcript | mLHcVHSSLIYnSQTLER | 1.58 | 4.9 | |
| 7 | 30 | ENSMUSG00000072929.6 | Gm15109|unprocessed_pseudogene | DTMVQEEEMDQGMHHHQDLSQK | 0.24 | 3.9 |
| 31 | ENSMUSG00000090699.1 | Gm9071|unprocessed_pseudogene | mKEKEVMSFLHNLEMEYIEAR | 1.51 | 6.2 | |
| 32 | ENSMUSG00000025495.10 | Ptdss2|nonsense_mediated_decay | NPSGYSLQHQERYcGQYFGFLMFWSHT | 1.01 | 6.9 | |
| 8 | 33 | ENSMUSG00000026414.9 | Tnnt2|retained_intron | DAILEALR | 1.67 | 4.8 |
| 34 | ENSMUSG00000025089.11 | Gfral|nonsense_mediated_decay | FPHTFYHRVLIcSTAWDPNK | 1.12 | 7.0 | |
| 9 | 35 | ENSMUSG00000034285.11 | Nipsnap1|nonsense_mediated_decay | IEVLGSLFR | 1.97 | 6.6 |
| 33 | ENSMUSG00000026414.9 | Tnnt2|retained_intron | DAILEALR | 1.61 | 4.8 | |
| 36 | ENSMUSG00000084274.2 | Gm12504|processed_transcript | MNYFcFHImWcYVLSFmAR | 0.33 | 3.7 | |
| 15 | ENSMUSG00000103242.1 | RP23-132G24.3|processed_pseudogene | MAEAIYIIEVKEWGK | 1.06 | 2.5 | |
| 37 | ENSMUSG00000102415.1 | TEC RP23-284P20.1|TEC | LTKTYQHVYcMLK | 0.91 | 3.2 | |
| 10 | 33 | ENSMUSG00000031626.12 | Tnnt2|retained_intron | DAILEALR | 1.72 | 4.8 |
| 38 | ENSMUSG00000031626.12 | Pros1|retained_intron | EnmDSnHKKTVFSILLEMR | 0.23 | 4.8 | |
| 39 | ENSMUSG00000031626.12 | Gm29365|unprocessed_pseudogene | SVTDmDTIEKSNLnRQFLFcPWDVTK | 0.64 | 8.5 | |
| 11 | 1 | ENSMUSG00000032985.11 | 5730522E02Rik|processed_transcript | LPQLAAAEPNRPR | 2.16 | 10.6 |
| 40 | ENSMUSG00000092054.3 | Kif4-ps|transcribed_processed_pseudogene | mLTELEK | 1.09 | 5.7 | |
| 41 | ENSMUSG00000090109.1 | Ear-ps10|unprocessed_pseudogene | TTVAMKSYTVAcNPR | 1.50 | 7.9 | |
| 42 | ENSMUSG00000099956.1 | Gm29365|unprocessed_pseudogene | DPAFYAYQLLDDYKEGnLHMIPDTPPAEERSGDDSDVLIGn | 0.61 | 6.0 | |
| 12 | 43 | ENSMUSG00000031626.12 | Sorbs2|processed_transcript | YQIFnFnR | 1.70 | 2.4 |
| 44 | ENSMUSG00000022686.10 | B3gnt5|processed_transcript | FVLETFPPGLLGGQRTSGTFK | 1.10 | 4.5 | |
| 45 | ENSMUSG00000083128.1 | Gm12723|processed_pseudogene | TEAIEALVK | 1.18 | 5.7 | |
| 12 | ENSMUSG00000031634.8 | Ufsp2|processed_transcript | mISSKPIER | 1.82 | 2.8 | |
| 46 | ENSMUSG00000020361.9 | Hspa4|processed_transcript | TQYVDHAGLELKGSHQPLPPK | 1.03 | 5.2 | |
| 47 | ENSMUSG00000091078.1 | antisense Gm17218|antisense | MASVSPEIKR | 1.38 | 1.6 | |
| 13 | 12 | ENSMUSG00000031634.8 | Ufsp2|processed_transcript | mISSKPIER | 1.88 | 2.8 |
| 48 | ENSMUSG00000103862.1 | TEC RP23-198F7.2|TEC | mRNWLVSPmnSK | 1.24 | 4.1 | |
| 14 | 6 | ENSMUSG00000042105.14 | Inpp5f|retained_intron | MLVLPVnLPR | 2.34 | 1.3 |
| 1 | ENSMUSG00000032985.11 | 5730522E02Rik|processed_transcript | LPQLAAAEPNRPR | 1.85 | 10.6 | |
| 49 | ENSMUSG00000042688.12 | Mapk6|retained_intron | FLFTnR | 1.65 | 1.7 | |
| 12 | ENSMUSG00000031634.8 | Ufsp2|processed_transcript | mISSKPIER | 1.58 | 2.8 | |
| 50 | ENSMUSG00000076594.1 | Ikgv6-13|IG_LV_gene | ASQn | 1.30 | 10.1 | |
| 51 | ENSMUSG00000005360.10 | Slcla3|retained_intron | VWEAPRYnK | 1.40 | 6.2 | |
| 52 | ENSMUSG00000103591.1 | TEC RP24-369B15.2|TEC | mMLKTIcRIINVFLILLnEDDAK | 1.26 | 5.4 | |
| 53 | ENSMUSG00000006010.10 | BC003331 |retained_ intron | ELSWIIWmKNGPQNMPAR | 1.48 | 3.0 | |
| 15 | 54 | ENSMUSG00000097002.1 | lincRNA Gm2670|lincRNA | KVnLFQAK | 1.98 | 3.5 |
| 33 | ENSMUSG00000026414.9 | Tnnt2|retained intron | DAILEALR | 1.93 | 4.8 |
Mouse Merged database was used for mass spectrometry database search