Table 4. Genes affected by GZP-specific SVs enriched in GO terms and KEGG pathway related with fertility of GZP pig.
| NO. | Chr | SV Start | SV End | SV Length | SV Type | Gene | Symbol | SV Location | GO/kegg ID |
|---|---|---|---|---|---|---|---|---|---|
| GZsv12513 | 6 | 20311318 | 20311590 | 272 | DEL | ENSSSCG00000002799 | CNOT1 | Intron | GO:0030331 GO:0033146 GO:0035258 GO:0030520 GO:0042974 |
| GZsv11540 | 5 | 78225835 | 78226139 | 304 | DEL | ENSSSCG00000020864 | VDR | Intron | GO:0060135 GO:0042974 |
| GZsv18234 | 8 | 113860056 | 113860306 | 250 | DEL | ENSSSCG00000009148 | LEF1 | Intron | GO:0030331;GO:0035258 |
| GZsv24487 | 12 | 22838005 | 22838322 | 317 | DEL | ENSSSCG00000017505 | MED1 | Intron | GO:0030331 GO:0033146 GO:0060135 GO:0035258 GO:0030520 GO:0042974 |
| GZsv28563 | 14 | 15027500 | 15027652 | 152 | DUP | ENSSSCG00000023666 | CTSB | Intron | GO:0060135 |
| GZsv34554 | 16 | 48808965 | 48809055 | 90 | DEL | ENSSSCG00000016976 | ZNF366 | Intron | GO:0030331 GO:0033146 GO:0035258 GO:0030520 |
| GZsv34801 | 16 | 66140226 | 66140303 | 77 | DEL | ENSSSCG00000028875 | HAVCR2 | Intron | GO:0060135 |
| GZsv04997 | 2 | 96288258 | 96288329 | 71 | DEL | ENSSSCG00000014149 | MEF2C | Intron | ssc04921 |
| GZsv06434 | 3 | 23971756 | 23972484 | 730 | INV | ENSSSCG00000007839 | EEF2K | Intron | ssc04921 |
| GZsv12631 | 6 | 28764371 | 28764445 | 74 | DEL | ENSSSCG00000029578 | NFATC3 | Intron | ssc04921 |
| GZsv13502 | 6 | 106214603 | 106214934 | 331 | DEL | ENSSSCG00000021893 | ROCK1 | Intron | ssc04921 |
| GZsv14469 | 6 | 165382096 | 165383623 | 1527 | DEL | ENSSSCG00000003909 | Novel gene* | Intron | ssc04921 |
| GZsv16830 | 8 | 11130507 | 11130784 | 277 | DEL | ENSSSCG00000008742 | CD38 | 3’UTR | ssc04921 |
| GZsv20391 | 9 | 98239262 | 98239451 | 189 | DEL | ENSSSCG00000015402 | CACNA2D1 | Intron | ssc04921 |
| GZsv24985 | 12 | 49955326 | 49955592 | 266 | DEL | ENSSSCG00000017873 | CAMKK1 | Upstream | ssc04921 |
| GZsv27142 | 13 | 137089754 | 137089859 | 105 | INS | ENSSSCG00000027952 | ADCY5 | Intron | ssc04921 |
| GZsv27144 | 13 | 137107559 | 137108002 | 443 | DEL | ENSSSCG00000027952 | ADCY5 | Intron | ssc04921 |
| GZsv34990 | 16 | 74352283 | 74352805 | 522 | DEL | ENSSSCG00000017101 | ADCY2 | Intron | ssc04921 |
| GZsv35481 | 17 | 17421770 | 17421871 | 101 | INS | ENSSSCG00000007056 | PLCB1 | Intron | ssc04921 |
| GZsv35498 | 17 | 18213874 | 18214792 | 918 | DEL | ENSSSCG00000007058 | PLCB4 | Intron | ssc04921 |
| GZsv36345 | 18 | 5484398 | 5484686 | 288 | DEL | ENSSSCG00000016432 | PRKAG2 | Intron | ssc04921 |
| GZsv36357 | 18 | 6232010 | 6232110 | 100 | DEL | ENSSSCG00000016450 | NOS3 | Upstream | ssc04921 |
*: Uncharacterized protein.