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Parameters that appear in the functional form used to fit cyclization profiles.
| Parameter | Meaning |
|---|---|
| ϕ | Phase-shift (specifically, basepair location of first peak after N = 145) |
| p | Period of oscillation (in basepairs) |
| a | Constant vertical shift (specifically, value of log10 J at first peak) |
| b | Linear drift (specifically, rise in log10 J from peak to next peak) |
| c | Quadratic coefficient (controls peak-to-trough difference) |
