Table 5.
L. monocytogenes sequence dataset for assessing the discriminatory power by hqSNP analysis.
| Serotype | Epidemiological relationship | Isolate ID | SRR number | Groups with clonal relationship |
|---|---|---|---|---|
| 1/2c | ATCC 51779 (Belgium) Independent colonies from the first subculture | PIR00541 (A) | SRR6347510 | Group 1 |
| PIR00541 (B) | SRR6347509 | |||
| PIR00541 (C) | SRR6347512 | |||
| 1/2a | ATCC 51775 (Belgium) Independent colonies from the first subculture | PIR00542 (A) | SRR6347487 | Group 2 |
| PIR00542 (B) | SRR6347488 | |||
| PIR00542 (C) | SRR6347489 | |||
| 4b | ATCC 13932 (Germany) Independent colonies from the first subculture | PIR00547 (A) | SRR6347353 | Group 3 |
| PIR00547 (B) | SRR6347402 | |||
| PIR00547 (C) | SRR6347351 | |||
| NCTC 11994 (UK) | PIR00492a | SRR6347453 | Group 4 | |
| SRR6347452 | ||||
| PIR00548b | SRR6347437 | |||
| SRR6347438 | ||||
| SRR6347439 |
a
For this isolate two genome sequences were generated from independent subcultures.
b
For this isolate three genome sequences were generated from independent subcultures.