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. 2018 Feb 12;10(3):840–856. doi: 10.1093/gbe/evy037

Table 4.

Functional Annotation of Genes Containing Parent-of-Origin Expressed SNPs

Chromosomes Number of Genes with Parental SNPs Genes or Position Number of Discriminant SNPs with a Parent-of-Origin Expression SNPs Positions Origin SNPs Expression Pattern Genes Function
Males
 Chr_1 3 Smp_151660 1 2817123 ♀ Biased Putative uncharacterized protein
Smp_128980 7

  • 21888575

  • 21888786

  • 21888843

  • 21888966

  • 21889671

  • 21890143

  • 21890705

 ♀ Monoallelic Aminomethyltransferase
Smp_083130 2

  • 39963130

  • 39963183

 ♀ Biased Beta1, 3-glucuronyltransferase I
 Chr_2 3

  • XLOC_009689

  • (10176395–10178030)

 1 10177131 ♂ Biased Endonuclease-reverse transcriptase
Smp_169030 1 17479792 ♂ Biased Probable asparagine–tRNA mitochondrial
Smp_147330 1 19943769 ♂ Biased Probable ATP-dependent RNA helicase dhx34
 Chr_2.SC_0193 1 Smp_171530 1 63337 ♂ Biased Beta Parvin related
 Chr_3.SC_0083 1 Smp_168560 1 661857 ♀ Biased Steroid dehydrogenase
 Chr_4 3 Smp_149950 1 3351765 ♀ Biased Bifunctional coenzyme a synthase

  • XLOC_015537

  • (18626181–18631701)

 1 18631541 ♂ Biased Gag-pol polyprotein
Smp_131150 1 28344103 ♀ Biased Exosome component 10
 Chr_5 1

  • XLOC_017885

  • (537474–540461)

 1 538919 ♀ Biased Tpa: endonuclease-reverse transcriptase
 ZW linkage group 1 Smp_171960 1 15939680 ♂ Biased Dehydrogenase: reductase SDR family 1
 SC_0138 1 Smp_125620 1 248617 ♂ Biased Coiled-coil domain-containing protein 60
 SC_0164 1 Smp_094930 1 60425 ♀ Biased Early growth response protein 1
 Mitochondria 1

  • XLOC_034755

  • (1–14415)

 86 Not shown ♀ Monoallelic (mitochondrial) Cytochrome c oxidase subunit i
Females
 Chr_1 5 Smp_034860 1 15501570 ♀ Biased Nuclear receptor 2dbd gamma
Smp_128970 1 21880758 ♂ Biased Endonuclease-reverse transcriptase/Inhibitor of growth protein 3
Smp_173620 1 30834128 ♀ Biased Transmembrane protein C9orf5/Strawberry notch related

  • XLOC_001902

  • (39431891–39435207)

 2

  • 39435074

  • 39435138

 ♀ Biased Gag-pol polyprotein
Smp_154960 1 44621620 ♂ Biased Putative cop-coated vesicle membrane protein P24 Emp24/gp25l family
 Chr_2 2 Smp_142400 1 4664882 ♂ Biased Bhlhzip transcription factor Bigmax
Smp_122810 2

  • 31605145

  • 31605184

 ♂ Biased Mechanosensory protein 2/MEChanosensory abnormality family member
 Mitochondria 1

  • XLOC_034755

  • (1–14415)

 24 Not shown ♀ Monoallelic (mitochondrial) Cytochrome c oxidase subunit i

Note.—The localization of the genes in known chromosomes or unassembled portion of S. mansoni’s genome for male and female adults is represented in this table. Number of SNPs, parental origin, expression pattern, and functional annotation are also presented. Expressed genes detected in this study that were not in the current annotated regions of S. mansoni’s genome version (v5.2) are mentioned as XLOCs as identified in the GTF transcriptome reference (Picard et al. 2016). Notice that for those genes, the genomic position has been provided.