Table 3.
List of temperature responsive genes that are induced under high ambient temperature
| Database | Contig ID | G3 | G5 | FC | DEG | Protein description | Protein symbol |
|---|---|---|---|---|---|---|---|
| UniRef90 | Contig12068 | 47.314 | 115.989 | 2.451 | O | Low temperature and salt responsive protein family | RCI2B |
| UniRef90 | TRINITY_DN194823_c4_g2_i1 | 1.183 | 2.434 | 2.057 | O | low-temperature-responsive protein 78 | LTI78 |
| UniRef90 | TRINITY_DN215430_c2_g10_i1 | 52.944 | 71.743 | 1.355 | temperature-induced lipocalin | ATTIL, TIL | |
| NR | Contig13986 | 13.059 | 21.587 | 1.653 | temperature sensing protein-related | EDA35 | |
| UniRef90 | TRINITY_DN212719_c3_g5_i1 | 22.746 | 27.332 | 1.202 | staurosporin and temperature sensitive 3-like b | STT3B | |
| NR | Contig13986 | 13.059 | 21.587 | 1.653 | temperature sensing protein-related | EDA35 | |
| UniRef90 | Contig18568 | 59.544 | 167.28 | 2.809 | O | soybean gene regulated by cold-2 | SRC2 |
| UniRef90 | TRINITY_DN204672_c3_g4_i1 | 81.603 | 185.102 | 2.268 | O | cold shock domain protein 1 | CSDP1 |
| UniRef90 | TRINITY_DN143765_c1_g1_i1 | 3344.374 | 6457.804 | 1.931 | cold, circadian rhythm, and RNA binding 1 | CCR1 | |
| UniRef90 | TRINITY_DN143765_c1_g1_i1 | 3344.374 | 6457.804 | 1.931 | cold, circadian rhythm, and rna binding 2 | CCR2 | |
| NR | Contig7422 | 32.93 | 58.654 | 1.781 | cold shock domain protein 3 | CSP3 | |
| UniRef90 | TRINITY_DN180886_c3_g1_i1 | 53.957 | 87.33 | 1.619 | cold regulated 413 plasma membrane 1 | COR413-PM1 | |
| UniRef90 | Contig29838 | 115.723 | 141.657 | 1.224 | COLD REGULATED 314 INNER MEMBRANE 1 | COR414-TM1 | |
| UniRef90 | Contig29838 | 115.723 | 141.657 | 1.224 | cold regulated 413 plasma membrane 1 | COR413-PM1 | |
| UniRef90 | Contig6806 | 655.021 | 798.658 | 1.219 | cold-regulated 47 | COR47 | |
| NR | Contig30457 | 62.891 | 52.302 | 0.832 | cold regulated gene 27 | ||
| NR | Contig30457 | 62.891 | 52.302 | 0.832 | cold regulated gene 27 | ||
| UniRef90 | Contig7573 | 71.504 | 241.895 | 3.383 | O | Heat shock cognate 70 kDa protein 2 | HSC-2 |
| UniRef90 | TRINITY_DN206978_c4_g7_i1 | 2.102 | 6.909 | 3.287 | O | Heat shock protein SSB1 | CTRG_03108 |
| UniRef90 | TRINITY_DN211503_c10_g1_i1 | 2.945 | 9.343 | 3.172 | O | Heat shock protein 70 cognate | POPTR_0001s03410g |
| UniRef90 | Contig10827 | 9.612 | 27.397 | 2.85 | O | Heat shock protein 70 | Hsp70 |
| UniRef90 | Contig12226 | 5.551 | 15.352 | 2.766 | O | Heat shock protein 70 | Hsp70 |
| UniRef90 | Contig27208 | 2.198 | 6.016 | 2.737 | O | Heat shock protein 70 cognate | POPTR_0001s03410g |
| UniRef90 | Contig491 | 21.018 | 56.678 | 2.697 | O | Heat shock protein 70 | Hsp70 |
| UniRef90 | Contig41549 | 13.056 | 32.822 | 2.514 | O | Heat shock protein 90-2 | HSP90-2 |
| UniRef90 | Contig7574 | 123.881 | 295.909 | 2.389 | O | Heat shock protein 70 (Fragment) | Hsp70 |
| UniRef90 | Contig13144 | 2.657 | 6.189 | 2.329 | O | Heat shock protein 90 | NtHsp90er-2 |
| UniRef90 | TRINITY_DN211503_c13_g8_i1 | 6.785 | 15.285 | 2.253 | O | Heat shock cognate protein | SCHSP70 |
| UniRef90 | TRINITY_DN211503_c13_g6_i1 | 5.548 | 12.377 | 2.231 | O | Heat shock cognate 70 kDa protein 2 | HSC-2 |
| UniRef90 | Contig7001 | 5.285 | 11.628 | 2.2 | O | Heat shock protein 60 | |
| UniRef90 | TRINITY_DN216671_c13_g21_i1 | 8.133 | 17.801 | 2.189 | O | Heat shock protein 70-like protein | Hsp70 |
| UniRef90 | TRINITY_DN177960_c1_g1_i1 | 9.841 | 21.242 | 2.159 | O | Heat Stress Transcription Factor family protein | POPTR_0016s05680g |
| UniRef90 | Contig13383 | 63.889 | 137.162 | 2.147 | O | Heat shock factor | NtHSF1 |
| UniRef90 | Contig42189 | 2.738 | 5.664 | 2.069 | O | Heat shock protein 70 | POPTR_0008s15140g |
| UniRef90 | Contig19499 | 47.77 | 96.941 | 2.029 | O | Heat shock protein DnaJ | POPTR_0017s08520g |
| UniRef90 | TRINITY_DN207002_c3_g1_i1 | 28.896 | 58.041 | 2.009 | O | Heat shock protein 70 cognate | POPTR_0001s03410g |
| UniRef90 | Contig5684 | 9.573 | 19.091 | 1.994 | Heat shock protein 70-like protein | Hsp70 | |
| UniRef90 | TRINITY_DN203097_c2_g2_i1 | 10.877 | 19.739 | 1.815 | Heat shock protein, putative | RCOM_1582180 | |
| UniRef90 | TRINITY_DN22543_c1_g1_i1 | 2.424 | 4.359 | 1.798 | Heat shock protein 90 | NtHsp90er-2 | |
| UniRef90 | TRINITY_DN208763_c5_g5_i1 | 1.235 | 2.108 | 1.707 | Heat shock protein 70 | RCOM_0911270 | |
| UniRef90 | TRINITY_DN163361_c0_g2_i1 | 1.609 | 2.741 | 1.704 | Heat shock 70 kDa protein, mitochondrial | HSP68 | |
| UniRef90 | TRINITY_DN213169_c3_g3_i1 | 3.711 | 6.094 | 1.642 | Heat shock cognate 70 kDa protein | LOC_Os11g47760 | |
| UniRef90 | TRINITY_DN190866_c6_g4_i1 | 4.813 | 7.637 | 1.587 | Heat shock protein binding protein, putative | RCOM_1732070 | |
| UniRef90 | TRINITY_DN163361_c0_g1_i1 | 1.814 | 2.832 | 1.561 | Heat shock 70 kDa protein, mitochondrial | Hsp68 | |
| UniRef90 | TRINITY_DN195294_c1_g1_i1 | 1.402 | 2.148 | 1.532 | Heat shock 70kD protein (Fragment) | Hsp70 | |
| UniRef90 | TRINITY_DN200501_c3_g4_i1 | 1.395 | 2.016 | 1.445 | Heat shock protein 90 (Fragment) | M569_09035 | |
| UniRef90 | Contig30036 | 2.547 | 3.653 | 1.434 | Heat shock protein 90 (Fragment) | Hsp90 | |
| UniRef90 | Contig4365 | 18.055 | 24.216 | 1.341 | Heat shock cognate protein | SCHSP70 | |
| UniRef90 | TRINITY_DN216543_c12_g10_i1 | 11.667 | 15.016 | 1.287 | Heat shock protein 60 (Fragment) | hsp60 | |
| UniRef90 | Contig20702 | 16.978 | 21.647 | 1.275 | Heat shock cognate 70 kDa protein | LOC_Os11g47760 | |
| UniRef90 | Contig34911 | 9.443 | 12.021 | 1.273 | Heat shock protein 70 | Hsp70 | |
| UniRef90 | Contig28357 | 3.003 | 3.812 | 1.269 | Heat shock 70 kDa protein 10 | HSP70-10 | |
| UniRef90 | TRINITY_DN213351_c2_g3_i1 | 3.194 | 3.823 | 1.197 | Heat shock factor protein 5 | POPTR_0010s11490g | |
| UniRef90 | Contig42828 | 2.283 | 2.632 | 1.153 | Heat shock protein binding protein, putative | RCOM_0564980 | |
| UniRef90 | TRINITY_DN195327_c8_g5_i1 | 2.726 | 2.974 | 1.091 | Heat shock 70 kDa protein 7 | HSP70-7 | |
| UniRef90 | TRINITY_DN208988_c4_g4_i1 | 12.901 | 13.632 | 1.057 | Heat shock protein 70 | POPTR_0001s29210g | |
| UniRef90 | Contig8566 | 10.542 | 10.921 | 1.036 | Heat shock protein | ophh-56 | |
| UniRef90 | TRINITY_DN174225_c0_g1_i1 | 1.589 | 29.996 | 18.877 | O | Putative uncharacterized protein | FPF1 |
| UniRef90 | Contig1416 | 8.015 | 21.611 | 2.696 | O | Uncharacterized protein | |
| UniRef90 | TRINITY_DN194926_c35_g60_i1 | 45.891 | 111.128 | 2.422 | O | Putative uncharacterized protein | LHY |
| UniRef90 | Contig1941 | 12.978 | 28.424 | 2.19 | O | Beta-amylase (EC 3.2.1.2) | |
| UniRef90 | TRINITY_DN211505_c5_g1_i1 | 7.987 | 15.501 | 1.941 | WRKY5 | FT | |
| UniRef90 | TRINITY_DN212536_c5_g1_i1 | 9.007 | 12.199 | 1.354 | Gigantea-like | GI | |
| UniRef90 | TRINITY_DN210901_c7_g2_i1 | 32.791 | 42.343 | 1.291 | Putative uncharacterized protein | TOC1 | |
| UniRef90 | TRINITY_DN212865_c9_g6_i1 | 1.239 | 2.948 | 2.379 | O | Phototropin-2 | PHOT2 |
| UniRef90 | TRINITY_DN216565_c8_g14_i1 | 1.612 | 2.838 | 1.761 | Phototropin-1 | M569_09651 | |
| UniRef90 | Contig7059 | 1.487 | 2.447 | 1.646 | Phototropin-2 | PHOT2 | |
| UniRef90 | TRINITY_DN143824_c1_g1_i1 | 370.609 | 458.745 | 1.238 | Chloroplast photosynthetic water oxidation complex 33kDa subunit | ||
| UniRef90 | TRINITY_DN207410_c1_g1_i1 | 1238.763 | 1242.461 | 1.003 | Photosystem I reaction center subunit IV A | MTR_7g099390 |
FC is the fold-change of contigs (G5/G3)