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Running time (seconds) of each method with different sizes of input data
| Methods |
Number of cells per group |
||||
|---|---|---|---|---|---|
| All | 70 | 50 | 30 | 10 | |
| SCDE | 17 962.8 | 10 200.5 | 5896.2 | 2113.8 | 322.8 |
| MAST | 135.2 | 110.7 | 100.9 | 84.6 | 61.5 |
| DESeq | 21.4 | 14.1 | 11.6 | 8.0 | 3.5 |
| Limma | 7.1 | 4.9 | 4.0 | 3.0 | 1.9 |
| ROTS | 805.8 | 624.0 | 538.4 | 426.6 | 293.6 |
The analyzed data are from LTHSC data by Kowalczyk et al. [16].
