Table 6. miRNA promoter regions harboring binding sites of TFs, NFκB (p65) and HOXD10.
| Frequency (random expectancy x 10–3) | |||||||
|---|---|---|---|---|---|---|---|
| miRNA promoter | TXN bound | Start nt from TSS | End nt from TSS | String | Dissimilarity (%) | Equally | Query |
| miR-34c | RelA | −787 | −778 | AGGGAATCAA | 14 | 1 × 10–5 | 1 × 10–5 |
| −769 | −760 | TGGGAAGTTT | 11 | 3 × 10–5 | 5 × 10–5 | ||
| −427 | −418 | TGGGAACCTT | 11 | 4 × 10–5 | 3 × 10–5 | ||
| −64 | −55 | TGGGAAGCCG | 13 | 4 × 10–5 | 4 × 10–5 | ||
| −56 | −47 | CGCTTTCCCA | 12 | 5 × 10–5 | 4 × 10–5 | ||
| -3 | 6 | GGGGAATGAG | 13 | 3 × 10–5 | 3 × 10–5 | ||
| HOXD10 | −864 | −855 | AGTTTGTATT | 10 | 1 × 10–4 | 2 × 10–4 | |
| −385 | −376 | CCCTTCTATT | 12 | 3 × 10–5 | 4 × 10–5 | ||
| miR-30e | RelA | −2888 | −2879 | GATATTCCCA | 2 | 6 × 10–6 | 5 × 10–6 |
| HOXD10 | −2553 | −2544 | TGGTTGTATT | 10 | 1 × 10–4 | 2 × 10–4 | |
| −2230 | −2221 | GCGTGATATT | 11 | 1 × 10–4 | 1 × 10–4 | ||
| −2122 | −2113 | TTTTTTTATT | 4 | 1 × 10–5 | 4 × 10–5 | ||
| −1967 | −1967 | TACTCATATT | 9 | 1 × 10–4 | 2 × 10–4 | ||
| miR-144 | RelA | −3207 | −3198 | AGGGAATTTG | 10 | 5 × 10–5 | 5 × 10–5 |
| HOXD10 | −2850 | −2841 | AATAGAATGA | 10 | 1 × 10–4 | 2 × 10–4 | |
| −2715 | −2706 | AATACAAAAA | 10 | 1 × 10–4 | 2 × 10–4 | ||
| −2412 | −2403 | CCATATTATT | 11 | 1 × 10–4 | 1 × 10–4 | ||
| −2336 | −2327 | AATAAGAGTA | 7 | 5 × 10–5 | 7 × 10–5 | ||
| −2312 | −2303 | ATTTATTATT | 10 | 1 × 10–4 | 2 × 10–4 | ||