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. 2018 Mar 21;7:e26148. doi: 10.7554/eLife.26148

Table 6. miRNA promoter regions harboring binding sites of TFs, NFκB (p65) and HOXD10.

Frequency (random expectancy x 10–3)
miRNA promoter TXN bound Start nt from TSS End nt from TSS String Dissimilarity (%) Equally Query
miR-34c RelA −787 −778 AGGGAATCAA 14 1 × 10–5 1 × 10–5
−769 −760 TGGGAAGTTT 11 3 × 10–5 5 × 10–5
−427 −418 TGGGAACCTT 11 4 × 10–5 3 × 10–5
−64 −55 TGGGAAGCCG 13 4 × 10–5 4 × 10–5
−56 −47 CGCTTTCCCA 12 5 × 10–5 4 × 10–5
-3 6 GGGGAATGAG 13 3 × 10–5 3 × 10–5
HOXD10 −864 −855 AGTTTGTATT 10 1 × 10–4 2 × 10–4
−385 −376 CCCTTCTATT 12 3 × 10–5 4 × 10–5
miR-30e RelA −2888 −2879 GATATTCCCA 2 6 × 10–6 5 × 10–6
HOXD10 −2553 −2544 TGGTTGTATT 10 1 × 10–4 2 × 10–4
−2230 −2221 GCGTGATATT 11 1 × 10–4 1 × 10–4
−2122 −2113 TTTTTTTATT 4 1 × 10–5 4 × 10–5
−1967 −1967 TACTCATATT 9 1 × 10–4 2 × 10–4
miR-144 RelA −3207 −3198 AGGGAATTTG 10 5 × 10–5 5 × 10–5
HOXD10 −2850 −2841 AATAGAATGA 10 1 × 10–4 2 × 10–4
−2715 −2706 AATACAAAAA 10 1 × 10–4 2 × 10–4
−2412 −2403 CCATATTATT 11 1 × 10–4 1 × 10–4
−2336 −2327 AATAAGAGTA 7 5 × 10–5 7 × 10–5
−2312 −2303 ATTTATTATT 10 1 × 10–4 2 × 10–4